PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA4G00325
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 448aa    MW: 49902.7 Da    PI: 4.8873
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA4G00325genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.59e-89404452373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl.....fsevsPilkfsh 95 
                ++lLl+cA+a++s+d  laq+++  l+++ spdgd++qRl++ f++AL +r a+++++l+ a+++ +++     ++e++ ++l     f++++P+++f++
  AA4G00325  40 ETLLLHCANAIESNDVVLAQQIIYLLNNITSPDGDSTQRLTSSFLRALISRAASKSPSLALAISSGSEN--LlFEQEIHRFTLlelarFVDLTPWHRFGF 137
                679***************************************************999998766655554..33556666665567799************ PP

       GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....................skeeleetgerLakfAeelgv 174
                + aN+aI++a++g + vHi+D+++++++Q p+L++++++   +++p l++T v ++ ++                       ++ee+g++L +fA++ ++
  AA4G00325 138 ISANSAIVDAIDGYSSVHIVDLSLTHCMQIPTLIDSISNNLnKPQPLLKLTIVTESVTTvtesvtananaiaiqfppplLGISYEELGSKLVNFAASRNI 237
                **************************************66648899*******998777899999*******999998888999**************** PP

       GRAS 175 pfefnvl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                ++ef+++   +++ +++l +e+L++++   +Eal+Vn++++lh+++de+++l+s   r+ +L+ +++l+P++v++++++ad +s +F  r+ + ++y + 
  AA4G00325 238 TMEFRIIsssYSDGFSSL-IEQLQLDEfdiNEALVVNCHMMLHYIPDETLTLNSksFRSGFLNHIRDLNPTIVTLIDEDADFTSIDFISRLRSVFNYLWI 336
                ******966555666666.99999999999*********************99977899***************************************** PP

       GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWk 363
                 +d+ ++ l r s++r+++E+  +g++i+nvva+eg er+er e++++W er+++a F+ v ++++aa+++k++l++++ ++g++ +  ++ + +vl+Wk
  AA4G00325 337 PYDTADTFLTRGSDQRRWYEAD-IGWKIENVVAKEGVERVERLESKRRWIERMKTARFGGVGFGDTAAMDVKSMLEEHAaGWGMKRDggDDVDHFVLTWK 435
                **********************.********************************************************888888887788999****** PP

       GRAS 364 drpLvsvSaW 373
                ++++v++SaW
  AA4G00325 436 GHSVVFASAW 445
                ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.60113423IPR005202Transcription factor GRAS
PfamPF035143.1E-8640445IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MMNITRFLNP TRPDSFTPPK TLSISGAGVS SSLPDANCIE TLLLHCANAI ESNDVVLAQQ  60
IIYLLNNITS PDGDSTQRLT SSFLRALISR AASKSPSLAL AISSGSENLL FEQEIHRFTL  120
LELARFVDLT PWHRFGFISA NSAIVDAIDG YSSVHIVDLS LTHCMQIPTL IDSISNNLNK  180
PQPLLKLTIV TESVTTVTES VTANANAIAI QFPPPLLGIS YEELGSKLVN FAASRNITME  240
FRIISSSYSD GFSSLIEQLQ LDEFDINEAL VVNCHMMLHY IPDETLTLNS KSFRSGFLNH  300
IRDLNPTIVT LIDEDADFTS IDFISRLRSV FNYLWIPYDT ADTFLTRGSD QRRWYEADIG  360
WKIENVVAKE GVERVERLES KRRWIERMKT ARFGGVGFGD TAAMDVKSML EEHAAGWGMK  420
RDGGDDVDHF VLTWKGHSVV FASAWVPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-513544783474Protein SHORT-ROOT
5b3h_B3e-523544729420Protein SHORT-ROOT
5b3h_E3e-523544729420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA4G00325
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596276.10.0PREDICTED: scarecrow-like protein 32
RefseqXP_013690820.10.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A078FIM70.0A0A078FIM7_BRANA; BnaC07g15890D protein
TrEMBLA0A0D3D8470.0A0A0D3D847_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EJ000.0A0A3P6EJ00_BRAOL; Uncharacterized protein
STRINGBo7g063640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-179GRAS family protein