PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA4G00214

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

WRKY

Protein Properties

Length: 185aa MW: 21417.4 Da PI: 6.0905

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA4G00214	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.6	1.3e-28	98	156	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++ + r+YY+C+s+gC+vkk+ver++ed+++v++tYeg Hnhe AA4G00214 98 MDDGYKWRKYGKKSVKNNVNKRNYYKCSSEGCNVKKRVERDSEDESYVITTYEGIHNHE 156 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.8E-31	85	158	IPR003657	WRKY domain
SuperFamily	SSF118290	8.11E-27	90	158	IPR003657	WRKY domain
PROSITE profile	PS50811	29.448	93	158	IPR003657	WRKY domain
SMART	SM00774	2.0E-31	98	157	IPR003657	WRKY domain
Pfam	PF03106	1.5E-22	99	156	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MNGPQNPNTN FNFLSDENFD PFMNNFDISN LIYDNGLIEE DTSSPTSIVS SETFTGENSG 60 SGKVNWSKKE SKRSEESETK KEIGHRVAFR TRSKIDVMDD GYKWRKYGKK SVKNNVNKRN 120 YYKCSSEGCN VKKRVERDSE DESYVITTYE GIHNHESPSH IYINDDMDHV SCSHENWTQH 180 TLLLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-25	88	159	7	78	Probable WRKY transcription factor 4
2lex_A	9e-25	88	159	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA4G00214

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452360.1	6e-87	PREDICTED: probable WRKY transcription factor 51
Swissprot	Q93WU9	2e-84	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A087GE67	3e-85	A0A087GE67_ARAAL; Uncharacterized protein
TrEMBL	A0A1J3D551	2e-85	A0A1J3D551_NOCCA; Putative WRKY transcription factor 51
STRING	A0A087GE67	5e-86	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-63	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]