PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA473G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 480aa    MW: 52603.5 Da    PI: 8.831
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA473G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.5e-28122178259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++er++ ++++v++ Y g+H+h+
  AA473G00001 122 HDGYNWRKYGQKLVKGNEFIRSYYRCTQPNCKAKKQLERTS-EGQTVDTNYFGQHDHH 178
                  7****************************************.***************8 PP
2WRKY105.23.4e-33298356159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCp+kk+vers++d+k++++tYeg+H+h+
  AA473G00001 298 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPAKKHVERSSHDGKFLITTYEGKHDHD 356
                  58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.332116180IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-25118180IPR003657WRKY domain
SuperFamilySSF1182903.01E-23118180IPR003657WRKY domain
SMARTSM007742.9E-30121179IPR003657WRKY domain
PfamPF031062.7E-21123178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-34284358IPR003657WRKY domain
SuperFamilySSF1182901.57E-28292358IPR003657WRKY domain
PROSITE profilePS5081134.406293358IPR003657WRKY domain
SMARTSM007741.8E-38298357IPR003657WRKY domain
PfamPF031061.6E-26299355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MTAIRELPTF EIEQVSSNAS KAGDAMTGRL EAGLATGTGT DKCESKKLIS EAYQVKQPQE  60
GNPKPSECKE LQLVPKTGES PSKVDTTSIA SEKESTTLES SVLSLQSGSE GNTPLIPEKV  120
MHDGYNWRKY GQKLVKGNEF IRSYYRCTQP NCKAKKQLER TSEGQTVDTN YFGQHDHHKP  180
LGSHSITTGA VPLYQHKHTD GFAAASKEKL SGSCGQAPHR TVPKPIGKGL QVSVASSTDD  240
LKAGTSQSSS TKSETHKDNI PASKRRKKEG GYVEQCRLDS PTNESRSVVH TQTLFDVVND  300
GYRWRKYGQK SVKGSPYPRS YYRCSSSGCP AKKHVERSSH DGKFLITTYE GKHDHDMPPG  360
RTLTHNKTLD LEVDKAKNKE LNSKAQDANT TPQISARVTI TEGQDHDGHK PEQTKTGEDG  420
YEKNLDQGSA LDVKPMEQMI LSKSDKLKDK IGHHAKPGIK SEDKATACQE ITATALGSQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-45120360176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA473G00001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488735.11e-165PREDICTED: WRKY transcription factor 1
SwissprotQ9SI371e-157WRKY1_ARATH; WRKY transcription factor 1
TrEMBLC0SV431e-160C0SV43_ARATH; Uncharacterized protein At2g04880 (Fragment)
STRINGXP_010488735.11e-165(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-139zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]