PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00622
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CO-like
Protein Properties Length: 358aa    MW: 39239.7 Da    PI: 6.2332
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00622genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.84.4e-081957339
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                +r C+ +++  +  fC+ ++ +lC +C + +H+   H++
  AA44G00622 19 ARFCDACKSVSAAVFCRADSAFLCITCDTRIHSFtrHER 57
                578******99*********************6577876 PP
2zf-B_box28.92.3e-0958103342
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                  ++C+ +e+ +++  C+ +   lC +C + +H+       H++vp+
  AA44G00622  58 VWVCEVCEQAPASVTCKADAAALCVTCDSDIHSAnplasrHERVPV 103
                 689*****************************66999999999986 PP
3CCT69.21e-23290333144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  AA44G00622 290 REARVSRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 333
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6081760IPR000315B-box-type zinc finger
SMARTSM003366.8E-81760IPR000315B-box-type zinc finger
CDDcd000216.61E-82060No hitNo description
PfamPF006431.9E-62058IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8556103IPR000315B-box-type zinc finger
PfamPF006432.1E-757103IPR000315B-box-type zinc finger
CDDcd000218.07E-959103No hitNo description
SMARTSM003362.9E-1061103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.747290332IPR010402CCT domain
PfamPF062035.3E-18290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGFCLDNIKA ISGGWGAAAR FCDACKSVSA AVFCRADSAF LCITCDTRIH SFTRHERVWV  60
CEVCEQAPAS VTCKADAAAL CVTCDSDIHS ANPLASRHER VPVEPFFDSA ESAVAKFSAS  120
TFGILNSSTT VDLTAVPVLG ANHHSDDLGL CPWLLPNDFN EPSKIDTNEM KSDFVFSDFD  180
RFIDFEYPNS LNQPPRNDNA GADSVVPVQT KIEQLPVTNN NNDHCFDIDF CRSKLSAFTN  240
PSQSISHSVS TSSVEFGVVP GSTMNGSNGD QTSSISGGIT NQQVCGGMDR EARVSRYREK  300
RKNRKFEKTI RYASRKAYAE SRPRIKGRFA KRTEPENDDV FLSHVYASSV QYGVVPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00622
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401182.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH80.0COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLV4KXA90.0V4KXA9_EUTSA; Uncharacterized protein
STRINGXP_006401182.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.10.0CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]