PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA44G00567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 69aa MW: 8231.48 Da PI: 11.1302 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.5 | 1e-15 | 27 | 68 | 2 | 47 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 +y+G+r +k +g+WvAeIr+p +kr r++lg++ ta Aa+a++ AA44G00567 27 RYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTAVAAARAYD 68 7******99.**********9...336******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.36E-17 | 27 | 68 | No hit | No description |
SuperFamily | SSF54171 | 2.88E-15 | 27 | 68 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.8E-14 | 27 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-9 | 27 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.085 | 27 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-22 | 27 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 69 aa Download sequence Send to blast |
MEREGSISIS LCEEKRKRKP ESTKERRYRG IRMRKWGKWV AEIREPNKRS RIWLGSYTTA 60 VAAARAYDT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA44G00567 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010438722.1 | 3e-27 | PREDICTED: ethylene-responsive transcription factor RAP2-9 | ||||
Swissprot | Q8W3M3 | 1e-26 | RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9 | ||||
TrEMBL | D7M7M2 | 1e-24 | D7M7M2_ARALL; Uncharacterized protein | ||||
STRING | XP_010438722.1 | 1e-26 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G06746.1 | 4e-29 | related to AP2 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|