PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00477
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family SRS
Protein Properties Length: 289aa    MW: 30835.9 Da    PI: 8.5796
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00477genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702216.84.7e-67992552154
      DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
                 +sgta+CqdCGnqakk+C+h+RCRtCCksrgfdC+thvkstWv+aa+rrerq ++a   +  ++ ++++ +k++r    ++q+a+s+t++s++ +++++
  AA44G00477  99 GSGTATCQDCGNQAKKECSHRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMTAGNPTGGSSVSTSSGTKKPRII-GSQQQATSHTSTSNT-PPQSF 195
                 57999***************************************************999999999999999*99986.677777788887776.66788 PP

      DUF702 101 etss......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 +tss      +P++v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e+
  AA44G00477 196 DTSSsrqdpaWPAQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGVES 255
                 88777999*************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.4E-60102254IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.9E-26104146IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.6E-30205253IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGMVGLRDVY VVAPAYHHHL HHHATTGVLS GSDQINTSAA AALSVPQTQT QHLNVEDTDM  60
NFLSRSNSKV AGVHVYQTNN QPHYLHFKSG GTSSNSGSGS GTATCQDCGN QAKKECSHRR  120
CRTCCKSRGF DCSTHVKSTW VSAARRRERQ VMTAGNPTGG SSVSTSSGTK KPRIIGSQQQ  180
ATSHTSTSNT PPQSFDTSSS RQDPAWPAQV RAAAVFKCVR VTAVEDGDDE YAYQAVVKIG  240
GHVFKGFLYD QGVESKETFP NMSDLHLGGG GNNNNHNAPP GSPPILDPP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00477
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469892.11e-133PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK91e-120LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A3P6DHC31e-131A0A3P6DHC3_BRACM; Uncharacterized protein
STRINGBra008898.1-P1e-130(Brassica rapa)
STRINGBra023372.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-101Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]