PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00364
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TALE
Protein Properties Length: 369aa    MW: 41743.3 Da    PI: 6.5541
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00364genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.4e-073123442254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +yp++e++++L +++gL+ +q+ +WF N+R +
  AA44G00364 312 WPYPTEEDKARLVDETGLQLKQINNWFINQRKR 344
                 69*****************************87 PP
2ELK292.3e-10265286122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  AA44G00364 265 ELKHELKQGYKEKIVDIREEIL 286
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-19101145IPR005540KNOX1
PfamPF037909.2E-18104144IPR005540KNOX1
SMARTSM012561.7E-25155211IPR005541KNOX2
PfamPF037914.1E-19162210IPR005541KNOX2
PROSITE profilePS512139.969265285IPR005539ELK domain
SMARTSM011886.1E-4265286IPR005539ELK domain
PfamPF037898.3E-7265286IPR005539ELK domain
PROSITE profilePS5007111.612285348IPR001356Homeobox domain
SMARTSM003898.6E-11287352IPR001356Homeobox domain
SuperFamilySSF466894.71E-16287353IPR009057Homeodomain-like
CDDcd000862.77E-10288347No hitNo description
Gene3DG3DSA:1.10.10.601.3E-24292350IPR009057Homeodomain-like
PfamPF059201.0E-17305344IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MTFHPNHLSQ DLPFNHFTDQ HHHHSPPPHP PSSPPQQQPN FQESTPSNWL NTSLLRSDNN  60
FLNLHTTTAS DSPSSVAANQ WLTQSSSSII GGSNKSDEAI ARHKAEILSH PLYEQLLSAH  120
VACLRIATPV DQLPRIDAQL AQSQNVMAKY SNLGSVQGLV ANEKELDHFM THYVLLLCSF  180
KEQLQQHVRV HAMEAVMACW EIEQSLQSFT ETGVSPGEGT GATMSEDEEE QVDSDVNLFD  240
GNFDGFGPLV PTESERSLME RVRQELKHEL KQGYKEKIVD IREEILRKRR AGKLPGDTTS  300
VLKSWWQSHS KWPYPTEEDK ARLVDETGLQ LKQINNWFIN QRKRNWHSNS SSSSSTVSKN  360
KRRSNAGEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00364
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287805.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A087GD380.0A0A087GD38_ARAAL; Uncharacterized protein
STRINGA0A087GD380.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-165KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]