PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00309
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 565aa    MW: 63181.1 Da    PI: 6.7572
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00309genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.54.4e-10259315155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k+++
  AA44G00309 259 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWN 315
                 57*******************4444.2344336655.7799999*************97 PP
2AP249.79.2e-16358409155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  AA44G00309 358 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 409
                 57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-13259324IPR016177DNA-binding domain
PfamPF008477.4E-8259315IPR001471AP2/ERF domain
CDDcd000181.42E-17259325No hitNo description
PROSITE profilePS5103216.753260323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-10260323IPR001471AP2/ERF domain
SMARTSM003801.1E-17260329IPR001471AP2/ERF domain
PRINTSPR003675.0E-6261272IPR001471AP2/ERF domain
CDDcd000182.58E-11358417No hitNo description
SuperFamilySSF541711.05E-17358418IPR016177DNA-binding domain
PfamPF008473.9E-10358409IPR001471AP2/ERF domain
PROSITE profilePS5103219.111359417IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18359417IPR001471AP2/ERF domain
SMARTSM003807.9E-31359423IPR001471AP2/ERF domain
PRINTSPR003675.0E-6399419IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MAPLTNWLTF SLSPMEMLRS SDQSHFVSYD ASSPVSSPYL LDNFYGWTNQ KPQEFFKEEA  60
QIAASMADST ILSTYVDSQT HHIPKLEDFL GDSSSIVRYS DNSQTETQDS SLTQIYDPRH  120
HQNHNHHSTT AGFYSDHHDF KAMANFQTAF STNSGSEVDD STSIGRNHLT GTGGEYLGHV  180
VESSGSELGF HGGSSTGGAL SLAVNNNNNT NHITDPYNTE ERINNNNDKI DSEKEKPIVA  240
VETSDSSKKI ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQARK GRQGGYDKED  300
KAARAYDLAA LKYWNATATT NFPIANYSKE LEEMKHMTKQ EFIASLRRKS SGFSRGASIY  360
RGVTRHHQQG RWQARIGRVA GNKDLYLGTF ATEEEAAEAY DIAAIKFRGI NAVTNFEMNR  420
YDVEAIMKSA LPIGGAAKRL KLSLESSSEQ KPILGQHNHH HLQQQQQQQI QSSPNHSINF  480
ALCPNSGVQS QIPCGIPFEA AALYHHQQQQ QQQQQQQQQN FFQHFPVTAG SDSTGSNSTV  540
QASMGLMAPN AAEFFLWPNH NQSNY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00309
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399549.10.0AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_024011965.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1J3E7580.0A0A1J3E758_NOCCA; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_006399549.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]