PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA44G00040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | NAC | ||||||||
Protein Properties | Length: 322aa MW: 36908.7 Da PI: 8.4468 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181 | 3.1e-56 | 19 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++l AA44G00040 19 LPPGFRFHPTDEELITHYLHKKVLDINFSA-KAIGEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFR-GKSL 115 79**************************99.88***************99999*****************************************.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfykgrapkg+kt+Wvmhe+rl AA44G00040 116 VGMKKTLVFYKGRAPKGHKTNWVMHEFRL 144 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-64 | 16 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.567 | 19 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-29 | 20 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEIFCGGIQK EDEEQQMDLP PGFRFHPTDE ELITHYLHKK VLDINFSAKA IGEVDLNKAE 60 PWELPYKAKM GEKEWYFFCV RDRKYPTGLR TNRATEAGYW KATGKDKEIF RGKSLVGMKK 120 TLVFYKGRAP KGHKTNWVMH EFRLDGKFSA HNLPKTAKNE WVICRVFHKT AGGKKIPISS 180 LIRIGSYETG SNLPPLTDSS TKTEPVYVPC FSNQTENRGN LLNCFTNSIQ TDFIPLYQSQ 240 SVQFHGNLQN PDPVLTQDQS VFQAMIENNR RQNFKTLNIS QETGVSNTDN SSDFDFGKKR 300 FDHQEVPSSS AGPVDLEPFW TY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-58 | 7 | 175 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-58 | 7 | 175 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-58 | 7 | 175 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-58 | 7 | 175 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-58 | 7 | 175 | 8 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-58 | 7 | 175 | 8 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-58 | 7 | 175 | 8 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-58 | 7 | 175 | 8 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-58 | 7 | 175 | 8 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-58 | 7 | 175 | 8 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-58 | 7 | 175 | 8 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-58 | 7 | 175 | 8 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-58 | 7 | 175 | 5 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-58 | 7 | 175 | 5 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00496 | DAP | Transfer from AT5G07680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA44G00040 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002871283.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 0.0 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | D7M0L4 | 0.0 | D7M0L4_ARALL; ANAC079/ANAC080/ATNAC4 | ||||
STRING | fgenesh2_kg.6__736__AT5G07680.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 0.0 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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