PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA420G00009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | G2-like | ||||||||
Protein Properties | Length: 182aa MW: 20228.8 Da PI: 4.5849 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.2 | 3.3e-27 | 67 | 117 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+rlrWt+eLH+ F++av++LGG+++AtPk+++elm+v+g++l+hvkSHLQ AA420G00009 67 KTRLRWTKELHDIFLNAVAKLGGPKRATPKKVKELMEVEGIALHHVKSHLQ 117 68************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.231 | 64 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-23 | 64 | 117 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.42E-13 | 66 | 119 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-23 | 67 | 117 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-6 | 69 | 117 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MKSQHLMSNK GKEKVVEEEA TIATQIENET CTKTMEEDQC TKESNEESKN CSSSKITACI 60 FITADDKTRL RWTKELHDIF LNAVAKLGGP KRATPKKVKE LMEVEGIALH HVKSHLQLNA 120 LQSSNMNQIL EAPLGEGNLP PSMVSDVANY VDEYIDWGQV ENINDEVDPV EVLESLGFGV 180 SP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 67 | 117 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 67 | 117 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 67 | 117 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 67 | 117 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 67 | 117 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 67 | 117 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 67 | 117 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 67 | 117 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA420G00009 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_178659.1 | 1e-31 | Homeodomain-like superfamily protein | ||||
Refseq | XP_024009285.1 | 3e-31 | uncharacterized protein LOC18014183 | ||||
TrEMBL | V4LBC5 | 5e-31 | V4LBC5_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.24399s0035.1.p | 5e-32 | (Boechera stricta) | ||||
STRING | XP_006418607.1 | 8e-32 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13406 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G06020.1 | 2e-30 | G2-like family protein |