PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00575
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 438aa    MW: 47857.8 Da    PI: 6.7118
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00575genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30176235159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  AA40G00575 176 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAtGCPVRKQVQRCADDMSILITTYEGTHNHS 235
                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-32161237IPR003657WRKY domain
SuperFamilySSF1182901.18E-27169237IPR003657WRKY domain
PROSITE profilePS5081128.908171237IPR003657WRKY domain
SMARTSM007749.8E-37176236IPR003657WRKY domain
PfamPF031064.6E-27177234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSEVKEENEK LKVMLERIES DYKSLKLRFF DIIQQESSTK SIQEDQNMID QSTDLSSLDQ  60
EGDLVSLSLG RTRTSVSPIQ NIAKKEEKVL FQEVNENEEL TKAELTLGFN NKNNNPSIEN  120
SSEEIPVESW SPANKVTGKR SSPPASGGGE IDENSQQNHV KRARVCVRAR CDTPTMNDGC  180
QWRKYGQKIA KGNPCPRAYY RCTVATGCPV RKQVQRCADD MSILITTYEG THNHSLPLSA  240
TTMASTTSAA ASMLLSGSTA SSSHSNLTSS SSPEIGLNFN NLYENSSRFM INNNNNNNKP  300
YYSQTSTSIH SPLHPTVTLD LTTPQHSSSL PSLNFNKFPN SFQRFPSTSL NFSSSSPSNS  360
SNSLNLPAIW GTGYGPYTPY PYNNVQFGST SSTSLGKATT NSQTLTETLT KALTSDPSFH  420
SVIAAAISTM VGSGNGEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21163237174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00575
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473567.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A178UB990.0A0A178UB99_ARATH; WRKY72
STRINGA0A087G7980.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-126WRKY DNA-binding protein 72