PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00573
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 319aa    MW: 37348 Da    PI: 6.4712
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00573genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.5e-18122174456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  AA40G00573 122 KKRLNLEQVRALEKSFEVGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 174
                 4568889*********************************************9 PP
2HD-ZIP_I/II128.92.1e-41120211192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+rl+ eqv++LE+sFe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++++lk++n++L +++++L+++l 
   AA40G00573 120 EKKKRLNLEQVRALEKSFEVGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFESLKSDNDSLLSHNKKLHAQLV 211
                  69**************************************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.55E-19116178IPR009057Homeodomain-like
SMARTSM003891.7E-17119180IPR001356Homeobox domain
PROSITE profilePS5007116.552120176IPR001356Homeobox domain
CDDcd000864.28E-15121177No hitNo description
PfamPF000462.6E-15122174IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-19124184IPR009057Homeodomain-like
PRINTSPR000311.2E-5147156IPR000047Helix-turn-helix motif
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5156172IPR000047Helix-turn-helix motif
PfamPF021831.1E-14176216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MYEEQTNNNN NNQEELRLEM AFPQHGFMFQ QLHEDSNVHH LTSPTSLPPH LFYGGGGNYM  60
MNNRSMSFTE LSEQHHHNHN HHHNQHHVTS KSPNENQEQV GLSLDEENLS DDGSQMMLGE  120
KKKRLNLEQV RALEKSFEVG NKLEPERKMQ LAKALGLQPR QIAIWFQNRR ARWKTKQLER  180
DYDSLKKQFE SLKSDNDSLL SHNKKLHAQL VALKKQERKE SSKIKREIIG GEEISWNNNE  240
NNNNNDESDQ VNMIKDLFPS SIRSSTTTND HIEHHHQMVN NQEQEQGFCN MFNSIDETTS  300
SAAAAYWPWS EQQQQHQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1398401e-42AC139840.1 Solanum demissum chromosome 5 clone PGEC323D8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680513.11e-143homeobox-leucine zipper protein HAT7-like
SwissprotQ004661e-142HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A0D3EFD71e-141A0A0D3EFD7_BRAOL; Uncharacterized protein
STRINGCagra.1036s0042.1.p1e-146(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-122homeobox 3