PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00567
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ZF-HD
Protein Properties Length: 278aa    MW: 30829.9 Da    PI: 9.6502
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00567genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.55.8e-3244100358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v+YkeClkNhAa +Ggha+DGCgEfmps+  + +++++l+CaAC+CHRnFHRr+ +
   AA40G00567  44 VVTYKECLKNHAAGIGGHALDGCGEFMPSQLFNlNEPSSLTCAACNCHRNFHRRDDS 100
                  689**************************9999999******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-234398IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.9E-264598IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-304698IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0654798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.48E-16179248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-27179247IPR009057Homeodomain-like
TIGRFAMsTIGR015654.8E-24190246IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDIIIPTISE PESEVLTRIQ SAKPISFSTD GKRSHRNHQT VEAVVTYKEC LKNHAAGIGG  60
HALDGCGEFM PSQLFNLNEP SSLTCAACNC HRNFHRRDDS SLTSVIIPSI EFRPHNRHQL  120
PPPLPLGIVR SSSPERRDHE LNRPILNRND NDDDNSISPP PISSSYMLLS LSGSRPKPES  180
EPGGRRGARR KRFRTKFSKF QKDKMLEFAE KIGWRMPKSE EGIVRMFCNE IGVDKNVFKV  240
WMHNNKAPGR GGAGVRRVSC GGGESDLGGG PISGSFSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-181912491876ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00567
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290001.12e-94zinc-finger homeodomain protein 8
SwissprotQ9LXG02e-90ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLR0H1074e-93R0H107_9BRAS; Uncharacterized protein
STRINGXP_006290001.17e-94(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-48homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]