PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA40G00430

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

MYB

Protein Properties

Length: 300aa MW: 34446.6 Da PI: 5.3557

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA40G00430	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l ++++++G g+W++ +++ g++R++k+c++rw +yl AA40G00430 14 KGPWTIEEDEKLMKYIQEHGHGSWRALPKEAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	56.3	7.3e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++ +lG++ W++Ia+ ++ gRt++++k++w+++l AA40G00430 67 RGNFTKEEEDTIINLHSLLGNK-WSSIASNLP-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.1E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.536	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.77E-32	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.68E-10	16	61	No hit	No description
PROSITE profile	PS51294	27.499	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-16	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	9.83E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MVRLPCCDET GLKKGPWTIE EDEKLMKYIQ EHGHGSWRAL PKEAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF TKEEEDTIIN LHSLLGNKWS SIASNLPGRT DNEIKNYWNT HLKKKLLQMG 120 IDPITHRPRT DHLNVLNALP QLIAAANFNN LLNLNQFDAT TLAKTQLVHN MIQILTTNNN 180 TNPNFGQSLF LENQNLFDQS QNFSQILDNH LDTTNSLAIG IDDQISLPPL ISDFCDETKE 240 SEMMIKNKNS NPSSSLSIST HDDDHHQPWC EMIDDETSDS YWKDIIEQTC PETWPFSDKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-28	12	116	5	108	B-MYB
1gv2_A	2e-28	12	116	2	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-28	12	116	2	105	C-Myb DNA-Binding Domain
1msf_C	2e-28	12	116	2	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA40G00430

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_197179.2	1e-152	myb domain protein 9
Refseq	NP_974792.1	1e-152	myb domain protein 9
Swissprot	Q9S9Z2	5e-83	MYB93_ARATH; Transcription factor MYB93
TrEMBL	F4KE69	1e-151	F4KE69_ARATH; Myb domain protein 9
STRING	AT5G16770.2	1e-152	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-139	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]