PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00375
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 528aa    MW: 58639.1 Da    PI: 6.9041
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00375genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-11182238155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++  g++ k  + g ++ +e+Aa+a++ a++k++g
  AA40G00375 182 SIYRGVTRHRWTGRYEAHLWDnTCKrEGQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 238
                 57*******************88885445526655.779999**************98 PP
2AP250.55.1e-16283332355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  AA40G00375 283 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 332
                 9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.95E-15182248IPR016177DNA-binding domain
CDDcd000181.60E-18182248No hitNo description
PfamPF008479.8E-9182238IPR001471AP2/ERF domain
PROSITE profilePS5103217.28183246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-12183247IPR001471AP2/ERF domain
SMARTSM003802.0E-22183252IPR001471AP2/ERF domain
PRINTSPR003673.4E-6184195IPR001471AP2/ERF domain
CDDcd000189.57E-24281340No hitNo description
SuperFamilySSF541711.7E-17281341IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-17282340IPR001471AP2/ERF domain
SMARTSM003804.3E-32282346IPR001471AP2/ERF domain
PROSITE profilePS5103218.9282340IPR001471AP2/ERF domain
PfamPF008477.2E-11283332IPR001471AP2/ERF domain
PRINTSPR003673.4E-6322342IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MNNWLGFSLS PHNRHRQEDI AGEYCYIAAD ESSSGGQTSF SSPYGVVLEP FTSKDNNNHS  60
RDWDINGNAC NNNLQNDQTG PKLENFLGRT TNNNGGDSDC GGPLGLSMIK TWLSTQPMPN  120
IDQDNNCVAS RTLSLSMNSS STTCDNNNNN KNNHVIVQEK TIVDGFDALP KKNIESFGQR  180
TSIYRGVTRH RWTGRYEAHL WDNTCKREGQ TRKGRQGGYD KEEKAARAYD LAALKYWGTT  240
TTTNFPMSDY ENEVEEMKHM TRQEYVASLR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG  300
RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL DSPSLPIGTA  360
AKRLKDVKVN VNVNVTNNCQ NAAFQHQLTN LNLLQQQQQQ GYNNGYHYNG GNYLSEARVC  420
CKQENQHQQQ QHFLSNSPSL MTIDSSCEDS VTGYGGYQGY VSPIGTSVNC EGFHAAEVAY  480
NARNSSYFGQ AEGDFSTVED LNSVSNVGSN VYFNGGGGAS GFTVWNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00375
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873828.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLD7LX050.0D7LX05_ARALL; Predicted protein
STRINGBostr.26527s0471.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein