PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA40G00302 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | B3 | ||||||||
Protein Properties | Length: 256aa MW: 29993.8 Da PI: 10.4485 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.5 | 8.9e-17 | 2 | 72 | 17 | 87 |
E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 ++p +f++++ +++ + ++++l++++g+sW +++ +k+++ y+ ++GW +Fv++ngL+e++ v+F+++++ AA40G00302 2 MIPGEFIRRIsQENGRLLFKMVLKTRWGKSWPIQI--SKTQKFyYMEKSGWDQFVNDNGLRENELVTFTHEEN 72 79********866667999****************..999999566669********************8664 PP | |||||||
2 | B3 | 48.1 | 2.1e-15 | 174 | 253 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l +pk+f+++h+ k e+k+ ++ +++g +sW+v + + ++++ +++GW + +k+ L gD+++Fkl++ +e+++ v r AA40G00302 174 FFLGIPKRFLDKHMPK--ETKEFMIHHKNGkKSWKVVYLV--TDKQSRISAGWARLAKEYPLVIGDVCIFKLIK--PTEMLLEVSR 253 4577*********855..55689999988889******55..5555559**********************987..5556777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.929 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.1E-7 | 1 | 83 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-15 | 2 | 72 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.95E-10 | 2 | 71 | No hit | No description |
SuperFamily | SSF101936 | 3.92E-14 | 2 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-15 | 3 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-19 | 156 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-19 | 158 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.758 | 161 | 255 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.72E-13 | 162 | 248 | No hit | No description |
SMART | SM01019 | 5.7E-17 | 164 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-12 | 171 | 251 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
RMIPGEFIRR ISQENGRLLF KMVLKTRWGK SWPIQISKTQ KFYYMEKSGW DQFVNDNGLR 60 ENELVTFTHE ENMFCNVEIY QINCEELLKP RKSSAIASSS SSSKNKTEQV KNMNINVKIE 120 DSDSRTVQSI RKTKNPNQEI NNKSEESKKK KKIDESSSSL IPEFTVTIKK SYLFFLGIPK 180 RFLDKHMPKE TKEFMIHHKN GKKSWKVVYL VTDKQSRISA GWARLAKEYP LVIGDVCIFK 240 LIKPTEMLLE VSRRAK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA40G00302 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010420536.1 | 2e-89 | PREDICTED: B3 domain-containing protein At5g18000-like | ||||
Swissprot | Q9FJG2 | 1e-80 | Y5800_ARATH; B3 domain-containing protein At5g18000 | ||||
TrEMBL | A0A087G823 | 4e-84 | A0A087G823_ARAAL; Uncharacterized protein | ||||
STRING | XP_010420536.1 | 9e-89 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 4e-75 | VERDANDI |
Publications ? help Back to Top | |||
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