PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA40G00283

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

G2-like

Protein Properties

Length: 267aa MW: 30927.1 Da PI: 9.7506

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA40G00283	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl AA40G00283 38 KPRLKWTQDLHERFVEAVNQLGGGDKATPKTIMRVMGIPGLTLYHLKSHLQKYRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.81	35	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-32	36	93	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-17	37	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-24	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-10	40	91	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-15	137	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MYYNNKHQRK LIPSSRMFIS SDQSHVQDYG LILSTDAKPR LKWTQDLHER FVEAVNQLGG 60 GDKATPKTIM RVMGIPGLTL YHLKSHLQKY RLSKNLNGQT NSSSNKFDLM TIMEEKTHEA 120 YHNEILSLGP VPNMNLPIND ALQLQIEVQR RLHEQLELRI EAQGKYLQTI LEKAQETLGR 180 QNLSAAAIET TKELSWPKKH LSDQNPNPKI SPSRNNHGSS LTIEMGLQEH KRRHVQNEFT 240 EEKIKKKDED FVIRNPKHFD LNGFSWD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA40G00283

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010454050.1	2e-97	PREDICTED: myb-related protein 1-like isoform X3
Swissprot	Q9FK47	2e-95	PHLA_ARATH; Myb-related protein 1
TrEMBL	R0HAX9	1e-95	R0HAX9_9BRAS; Uncharacterized protein
STRING	XP_010454048.1	5e-94	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.3	1e-100	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]