PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00257
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 482aa    MW: 50911.5 Da    PI: 7.6189
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00257genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.4e-124974227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +++ C +++rtG C yG+rC+F+H++
  AA40G00257 49 DEADCIYYLRTGVCGYGSRCRFNHPR 74
                6799********************96 PP
2zf-CCCH36.11.1e-1196120327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C++f+rtGtCk+G++Ck++H++
  AA40G00257  96 QPVCQHFMRTGTCKFGGSCKYHHPR 120
                 689********************96 PP
3zf-CCCH40.54.7e-13143167226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++rtG+Ck+G++C+F+H+
  AA40G00257 143 GEKECSYYMRTGQCKFGSTCRFNHP 167
                 7899********************9 PP
4zf-CCCH33.66.7e-11323348126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++++ C++f+rtG Ck+ ++C+++H+
  AA40G00257 323 PGQPDCQYFLRTGDCKFSSSCRYHHP 348
                 5789*********************9 PP
5zf-CCCH31.33.6e-10371393426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C++fa+ G+Ck+G+ CkF H+
  AA40G00257 371 AQCSHFAQHGICKFGPACKFDHS 393
                 67********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-44774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6384775IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-94974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-55374IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-693120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.34793121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-696120IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-996120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-498120IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3141169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6142169IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-5147166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15322350IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-6322349IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-8324348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5327351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873367395IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4367394IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6370397IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-8371393IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4373395IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEPYGEDISR SDPSLEWSSA SRGESNIEAS MWRLGLRGGV NETYPERPDE ADCIYYLRTG  60
VCGYGSRCRF NHPRNRGAIL GGYRTESGEF PERIGQPVCQ HFMRTGTCKF GGSCKYHHPR  120
QGGGSSSVTP ISFNYMGYPL RPGEKECSYY MRTGQCKFGS TCRFNHPVPP SVQAPLQQQL  180
AAGGPPGMYP SVQSSSVPSS HQQYGVVMAR PPPPPPPLLG GSYVQGPYGP LVIPPGMVPY  240
PGWNPYQGSV GGAMASPGGS SQQQQSMGSS SMYGGITPLS PSAAAYTYTT TTSAPYQSGP  300
SSSSTTISNA AAPEKEESFP QRPGQPDCQY FLRTGDCKFS SSCRYHHPLE AITPKTNTLT  360
HIGLPIRPGA AQCSHFAQHG ICKFGPACKF DHSISTLSYS PSASSLTDMP VAPYPVGSSL  420
ATLAPSSSSS DLPPELTSSS SKETVTVQTR PSGAETVTAG VSASVSSGVS HPEAGESSGD  480
SS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00257
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197356.20.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A178U7840.0A0A178U784_ARATH; Uncharacterized protein
STRINGAT5G18550.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-150C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]