PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA40G00004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | WRKY | ||||||||
Protein Properties | Length: 190aa MW: 21957.7 Da PI: 9.8665 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108 | 4.5e-34 | 38 | 96 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+ gC vkk+vers++dp++v +tYeg+H h+ AA40G00004 38 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHSHP 96 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-34 | 23 | 98 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-30 | 31 | 98 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.845 | 33 | 98 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-40 | 38 | 97 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-27 | 39 | 96 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGDLCVFIYT RLKAKKKNQK KGREARFAFL TKSDIDNLDD GYRWRKYGQK AVKNSPYPRS 60 YYRCTTVGCG VKKRVERSSD DPSIVMTTYE GQHSHPFPIT PRGHLGMLTS PILDPHHSSY 120 FLTHQHQQQQ QHYNNIYNNR SISNEGIFVN SQPSTSTSVR DHGLLQDIIL PSQIRSDLIS 180 NQINQEDEKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-31 | 22 | 98 | 1 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-31 | 22 | 98 | 1 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA40G00004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618061.1 | 8e-81 | PREDICTED: probable WRKY transcription factor 48 | ||||
Swissprot | Q9FGZ4 | 1e-79 | WRK48_ARATH; Probable WRKY transcription factor 48 | ||||
TrEMBL | A0A0D3AX35 | 2e-79 | A0A0D3AX35_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g151740.1 | 3e-80 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5624 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 2e-75 | WRKY DNA-binding protein 48 |
Publications ? help Back to Top | |||
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