PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA3G00272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | WRKY | ||||||||
Protein Properties | Length: 123aa MW: 13830.3 Da PI: 7.5188 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32 | 2.4e-10 | 103 | 122 | 2 | 21 |
--SS-EEEEEEE--TT-SS- CS WRKY 2 dDgynWrKYGqKevkgsefp 21 dDgy+WrKYGqK++k++++p AA3G00272 103 DDGYKWRKYGQKSIKNTPNP 122 8*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-9 | 94 | 122 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.507 | 97 | 123 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-8 | 97 | 122 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-6 | 103 | 122 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MGEEEEASEW IRGFQNKEVN ELLRVTKPPL LFIPQEQDTK VATANEYLTS STLHSPAPVL 60 EPRDAPVRPI SISNFSPLEK SSSSSKVDKY TLKVTNSSNG MIDDGYKWRK YGQKSIKNTP 120 NPX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA3G00272 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010442042.1 | 2e-30 | PREDICTED: probable WRKY transcription factor 49 | ||||
Swissprot | Q9FHR7 | 4e-29 | WRK49_ARATH; Probable WRKY transcription factor 49 | ||||
TrEMBL | A0A087GMD6 | 2e-28 | A0A087GMD6_ARAAL; Uncharacterized protein | ||||
STRING | XP_010442042.1 | 7e-30 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9405 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 7e-29 | WRKY DNA-binding protein 49 |