PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00270
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 160aa    MW: 18347.6 Da    PI: 6.7879
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00270genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY43.66e-141362358
               EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
               +YY+Ct + C++kk+vers ++p++ +itY g H h
  AA3G00270  1 NYYKCTNPICNAKKQVERSIDEPNTYIITYDGLHLH 36
               5*********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031062.7E-9136IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-11136IPR003657WRKY domain
PROSITE profilePS5081113.299139IPR003657WRKY domain
SMARTSM007742.3E-6138IPR003657WRKY domain
SuperFamilySSF1182908.24E-11136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
NYYKCTNPIC NAKKQVERSI DEPNTYIITY DGLHLHFIYP FFIPHNKAHR PNKKPKLYKH  60
DTQFESLSKR AYKAQENTEE GNLTEELFIP VEQRRRQQGL LEDVVAPAIK DFPTKDSSCT  120
SSSSSSSLTT SSPFSPLPWS PNFNIELSDE ILELIGSHTL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481875.13e-52PREDICTED: probable WRKY transcription factor 49
SwissprotQ9FHR74e-44WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLV4NF494e-50V4NF49_EUTSA; Uncharacterized protein
STRINGXP_010481875.11e-51(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-38WRKY DNA-binding protein 49