PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00265
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family SBP
Protein Properties Length: 448aa    MW: 49823.5 Da    PI: 8.8316
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00265genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.84.7e-41177253278
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                Cqv+gC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  AA3G00265 177 CQVDGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQP 253
                **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33173238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.787174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-39175256IPR004333Transcription factor, SBP-box
PfamPF031102.4E-32177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MECNAKPSLQ WEWDNLISFG ASSAENPRKM RPMEWEIDGF DCTSLYSSGL AAVTSGVGPG  60
SDLGHAFSRS SKSTSITSSS ADVRTHNFTS EAGESLPGEL CSSEEFAKGI GNSPSLELSF  120
GSSDPVLGLK LGKRTYFEDF WEVENVKGSA LPVSLTASAS PVKRSKSITQ RLPTPHCQVD  180
GCNLDLSSAK DYHRKHRICE NHSKFPKVVV SGVERRFCQQ CSRFHGLSEF DEKKRSCRRR  240
LSDHNARRRK PQPEPIQLNP GRTYDGKQQM NFVWNRFEVI HPRREDKFLW ERIPSSKPVP  300
SRGLLTQPAK TETSSDRRLF SSTTNEHGGF GLLVPKTKTA TAELFSKEQV AMSSHVGASQ  360
DLDGALSLLS NSTSWASSLQ PVPPPHRSPV TQLNSVSSYW QQQPDLSASQ SQPQNAVHRN  420
GTTTPQFQLF RGQLCNDNNY YGQNQFFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271772501184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00265
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481881.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010481882.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010481883.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010481884.10.0PREDICTED: squamosa promoter-binding-like protein 2
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLS4WVY00.0S4WVY0_ARAAL; SQUAMOSA promoter binding protein-like protein 2
STRINGS4WVY00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2