PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA3G00221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ZF-HD | ||||||||
Protein Properties | Length: 241aa MW: 27566 Da PI: 7.7521 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 69.1 | 7.4e-22 | 56 | 108 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +k++Y +C+kN+A lG+ a+DGCgEf++++ ee ++++C ACgCHR+FH ++ AA3G00221 56 KKLHYGQCRKNQADGLGTIAYDGCGEFVSAPAEE---DSMNCVACGCHRSFHEEKS 108 5789*************************97666...***************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 6.2E-17 | 58 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.2E-19 | 59 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.265 | 60 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-14 | 60 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 171 | 240 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.37E-14 | 175 | 240 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.892 | 180 | 241 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 1.4E-26 | 182 | 238 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDEKLKCVDD ATAFICREIG DHVHYPPARV ARSSRLHHAP SSIHYTGLES TSRITKKLHY 60 GQCRKNQADG LGTIAYDGCG EFVSAPAEED SMNCVACGCH RSFHEEKSLN KTIRSTNNEN 120 DFTEAVIKVL KRSSDQLRQI LTCPYTSKFE ENEPSPSGVD LISKDEHRGG DVVEKEEKGL 180 KVKRFKTKFS AEQTEKMRNY AEKLQWKINP ENKDEVEQFC SEIGVKLQKF RVWLQNHRDK 240 N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-14 | 182 | 239 | 17 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA3G00221 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865484.1 | 2e-77 | zinc-finger homeodomain protein 13 | ||||
Swissprot | Q9FMY7 | 1e-67 | ZHD13_ARATH; Zinc-finger homeodomain protein 13 | ||||
TrEMBL | A0A1J3E1G3 | 3e-77 | A0A1J3E1G3_NOCCA; Zinc-finger homeodomain protein 13 | ||||
STRING | scaffold_800848.1 | 7e-77 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15888 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42780.1 | 5e-66 | homeobox protein 27 |