PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA3G00213 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | B3 | ||||||||
Protein Properties | Length: 181aa MW: 20700.6 Da PI: 7.7088 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.7 | 1.4e-15 | 96 | 179 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp +f+++h k ++ +tl de+g++ e + r+++ l++GW +F+ +++L +gD +vF+l++ ++f AA3G00213 96 FIKSMLQSHVSGGFWLGLPVHFCRSHLPK--SDGVITLIDEDGEEHETIHLARRTG----LSGGWMGFAVSHNLADGDALVFQLIRPTTF 179 89************************423..3448***************555555....***********************9986655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.65E-21 | 90 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-17 | 91 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-23 | 94 | 181 | No hit | No description |
Pfam | PF02362 | 1.1E-12 | 96 | 179 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-19 | 96 | 181 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.307 | 96 | 181 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MVVAKRSSSY EEFRLRRVEE NKKRMEALNL LKLSRDLHST SMKSSQVLIL FFYFRNEMCK 60 VRDFSNRVYA SEESRDDALS RAEKLQADLG DEFPSFIKSM LQSHVSGGFW LGLPVHFCRS 120 HLPKSDGVIT LIDEDGEEHE TIHLARRTGL SGGWMGFAVS HNLADGDALV FQLIRPTTFK 180 V |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA3G00213 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010481962.1 | 8e-87 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X2 | ||||
Swissprot | Q9FMZ4 | 1e-79 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A398AD74 | 5e-83 | A0A398AD74_BRACM; Uncharacterized protein | ||||
STRING | XP_010495620.1 | 4e-84 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 5e-82 | B3 family protein |
Publications ? help Back to Top | |||
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