PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00145
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26639.1 Da    PI: 9.8668
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00145genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-31958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  AA3G00145  9 KRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 58
               79***********************************************8 PP
2K-box104.31.5e-34761733100
      K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +++++s++e +a+++qqe+akL+++i++Lq+++R+l+G++L+sLs+keL+q+e++Lek++++iRskK+elll++ie+lqk+e el++e  +Lr+k++e
  AA3G00145  76 STHTSSVQEINAAYYQQESAKLRQQIQTLQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLAEIENLQKREIELDNESIYLRTKIAE 173
                45566699***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.936161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-33282IPR002100Transcription factor, MADS-box
CDDcd002653.80E-43276No hitNo description
PRINTSPR004046.2E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-333859IPR002100Transcription factor, MADS-box
PfamPF014865.5E-2586171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.90587177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANH  60
NIRSTIERYK KASSDSTHTS SVQEINAAYY QQESAKLRQQ IQTLQNSNRN LMGDSLSSLS  120
VKELKQVENR LEKAISRIRS KKHELLLAEI ENLQKREIEL DNESIYLRTK IAEVERLQQH  180
HHHMVNNTEI NAIEALASRN YFAHSIMTSA HGTGSATGAA GSYSDPDKKL LHLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-21173173Myocyte-specific enhancer factor 2B
1tqe_Q2e-21173173Myocyte-specific enhancer factor 2B
1tqe_R2e-21173173Myocyte-specific enhancer factor 2B
1tqe_S2e-21173173Myocyte-specific enhancer factor 2B
6c9l_A2e-21173173Myocyte-specific enhancer factor 2B
6c9l_B2e-21173173Myocyte-specific enhancer factor 2B
6c9l_C2e-21173173Myocyte-specific enhancer factor 2B
6c9l_D2e-21173173Myocyte-specific enhancer factor 2B
6c9l_E2e-21173173Myocyte-specific enhancer factor 2B
6c9l_F2e-21173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00145
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735970.11e-145agamous-like MADS-box protein AGL11 isoform X1
RefseqXP_013735971.11e-145agamous-like MADS-box protein AGL11 isoform X2
SwissprotQ388361e-145AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBLA0A3P6EAM91e-144A0A3P6EAM9_BRAOL; Uncharacterized protein
STRINGBra037895.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49942234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-145MIKC_MADS family protein
Publications ? help Back to Top
  1. Ezquer I, et al.
    The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat.
    Plant Cell, 2016. 28(10): p. 2478-2492
    [PMID:27624758]