PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00054
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 323aa    MW: 36066.2 Da    PI: 4.5777
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00054genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.17.4e-28149209259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                dD ++WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+ dp+++++tY+g+H+++
  AA3G00054 149 DDFFSWRKYGQKDILGAKYPRSYYRCTFRntqKCCATKQVQRSDGDPTIFDVTYRGTHTCS 209
                899************************998889**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.782143206IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-27144210IPR003657WRKY domain
SuperFamilySSF1182902.48E-24147210IPR003657WRKY domain
SMARTSM007746.9E-38148210IPR003657WRKY domain
PfamPF031063.1E-25149208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEGKESMFSW EQETLLNELI HGLQAAKQLQ SQLGAASSPP YSSPPMTEIN ESLLHQIVSS  60
YEKAILMLNG SLSLYSIQQS NPVTEKVEIT VVPVSNSGRV PESPASVSPG SEDFLDGGSI  120
FSSKKRKMLP RWTEQVRISP ERGLEGPQDD FFSWRKYGQK DILGAKYPRS YYRCTFRNTQ  180
KCCATKQVQR SDGDPTIFDV TYRGTHTCSQ TIPPPENRDT KPNLTNVNYQ NDLLDNLRTN  240
LTVRTEEELD GDAFSFPFTT PFYGDFGCDS TVCHVECSGP SDFTGLISTN TSTGSSPIFD  300
VDFRFDPTVE IETGFPTFLH DLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-18149208968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00054
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458950.11e-151PREDICTED: probable WRKY transcription factor 41
SwissprotQ8H0Y81e-132WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A1J3G0661e-149A0A1J3G066_NOCCA; Putative WRKY transcription factor 41
STRINGXP_006396960.11e-145(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-130WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]