PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA3G00054 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | WRKY | ||||||||
Protein Properties | Length: 323aa MW: 36066.2 Da PI: 4.5777 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.1 | 7.4e-28 | 149 | 209 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs+ dp+++++tY+g+H+++ AA3G00054 149 DDFFSWRKYGQKDILGAKYPRSYYRCTFRntqKCCATKQVQRSDGDPTIFDVTYRGTHTCS 209 899************************998889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 20.782 | 143 | 206 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-27 | 144 | 210 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-24 | 147 | 210 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.9E-38 | 148 | 210 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-25 | 149 | 208 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MEGKESMFSW EQETLLNELI HGLQAAKQLQ SQLGAASSPP YSSPPMTEIN ESLLHQIVSS 60 YEKAILMLNG SLSLYSIQQS NPVTEKVEIT VVPVSNSGRV PESPASVSPG SEDFLDGGSI 120 FSSKKRKMLP RWTEQVRISP ERGLEGPQDD FFSWRKYGQK DILGAKYPRS YYRCTFRNTQ 180 KCCATKQVQR SDGDPTIFDV TYRGTHTCSQ TIPPPENRDT KPNLTNVNYQ NDLLDNLRTN 240 LTVRTEEELD GDAFSFPFTT PFYGDFGCDS TVCHVECSGP SDFTGLISTN TSTGSSPIFD 300 VDFRFDPTVE IETGFPTFLH DLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-18 | 149 | 208 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA3G00054 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018458950.1 | 1e-151 | PREDICTED: probable WRKY transcription factor 41 | ||||
Swissprot | Q8H0Y8 | 1e-132 | WRK41_ARATH; Probable WRKY transcription factor 41 | ||||
TrEMBL | A0A1J3G066 | 1e-149 | A0A1J3G066_NOCCA; Putative WRKY transcription factor 41 | ||||
STRING | XP_006396960.1 | 1e-145 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 1e-130 | WRKY family protein |
Publications ? help Back to Top | |||
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