PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA3G00048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ERF | ||||||||
Protein Properties | Length: 271aa MW: 29953.7 Da PI: 4.9437 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 74 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g AA3G00048 74 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 124 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.66E-32 | 74 | 131 | No hit | No description |
Pfam | PF00847 | 1.5E-12 | 75 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-30 | 75 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-37 | 75 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 75 | 132 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.327 | 75 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEINQPRILR ISVTDPYATD SSSEDEGFQQ IIKRRRIKKF VTEVTLHSSQ NKPKKKKPVK 60 KELQKVKISP TPEKKFRGVR QRPWGKWAAE IRDPLRRVRL WLGTYDTAEE AAMVYDNAAI 120 QLRGPHALTN FSSPASEKDE DLKMKMPGIV ASSSSSGGEC LNSPVSVLQS PFAGDEFSGG 180 STVEIPVKDE PSTTVVSDTF TNFSAPIFSD DDVFDFGGEI FGDDLLMNTD MEFGFGFGFG 240 SGSGSRLSSW HVDDFLQDIG DLFGSDPLLA V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-21 | 74 | 131 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 36 | KRRRI |
2 | 53 | 60 | KKKKPVKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA3G00048 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013671473.1 | 1e-98 | ethylene-responsive transcription factor CRF2-like | ||||
Swissprot | Q9SUQ2 | 6e-95 | CRF2_ARATH; Ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A1J3HC46 | 3e-98 | A0A1J3HC46_NOCCA; Ethylene-responsive transcription factor CRF2 | ||||
STRING | Bra013730.1-P | 3e-96 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 3e-86 | cytokinin response factor 2 |
Publications ? help Back to Top | |||
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