PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00710
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 378aa    MW: 43052.5 Da    PI: 8.5433
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00710genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055577123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C++C++ F r  nL+ H r+H
  AA39G00710 55 YICEICSQGFQRDQNLQMHRRRH 77
                89********************9 PP
2zf-C2H215.54.8e-05135157123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k +  +s++k H++t+
  AA39G00710 135 WVCQRCSKAYAVQSDYKAHLKTC 157
                 58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.72E-55278No hitNo description
Gene3DG3DSA:3.30.160.603.7E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8035577IPR007087Zinc finger, C2H2
SMARTSM003550.0145577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035512099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-4122156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035588135162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MIDYETNNNN HQNIPSSSSS DPLTHKRKRR PAGTPDPEAE VISLSPRTLL ESDRYICEIC  60
SQGFQRDQNL QMHRRRHKVP WKLLKREKKE EEVIKKRVYV CPEPTCLHHD PCHALGDLVG  120
IKKHYRRKHS VHKQWVCQRC SKAYAVQSDY KAHLKTCGSR GHSCDCGRVF SRVESFIEHQ  180
DNCTIRRSPA TNHRQDQPPA TATPSTNGDL NIGPLLYGLP LLKHHSPAAL NSQFNNTSSA  240
QSQSLELQLK PYLNSDEIHE TSLNLWIGTD TSSSRAVNPK EKADEEMQKA EEARREAKRQ  300
REMAETEFEN AKRLRKEAKA ELEKAHVLRE EAIKRINATM MHITCHSCKV LFHVPLNGED  360
TTTSSLAVSS ATTEGECL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-16133183555Zinc finger protein JACKDAW
5b3h_F1e-16133183555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00710
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109864.11e-172PREDICTED: protein indeterminate-domain 16-like
RefseqXP_013657199.11e-172protein indeterminate-domain 16-like isoform X1
SwissprotQ9C9X71e-158IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A078HGY81e-171A0A078HGY8_BRANA; BnaA08g19250D protein
TrEMBLA0A3P6BUW81e-171A0A3P6BUW8_BRACM; Uncharacterized protein
TrEMBLM4D3C71e-171M4D3C7_BRARP; Uncharacterized protein
STRINGBra010981.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-131indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]