PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA39G00678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | RAV | ||||||||
Protein Properties | Length: 319aa MW: 36247.3 Da PI: 10.1289 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.9 | 1.8e-11 | 49 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f ++Aa a++ a+++++g AA39G00678 49 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNLQQDAASAYDIAARRFRG 97 79****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 102.4 | 2.6e-32 | 170 | 269 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k+ tpsdv+k++rlv+pk++ae+h + +++ + led++g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++ ++el++ + AA39G00678 170 FEKTVTPSDVGKLNRLVIPKQYAEKHfplPLT-SNGVLINLEDLTGKMWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVMFQRSTGLNRELFIDW 267 99*************************98444.4679*************************************************8766777788777 PP E- CS B3 97 fr 98 + AA39G00678 268 KS 269 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-6 | 49 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.77E-24 | 49 | 104 | No hit | No description |
SuperFamily | SSF54171 | 2.88E-15 | 49 | 104 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.492 | 50 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-19 | 50 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-25 | 50 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-41 | 164 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-33 | 165 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.70E-30 | 169 | 256 | No hit | No description |
SMART | SM01019 | 1.0E-26 | 170 | 271 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.411 | 170 | 271 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-29 | 170 | 270 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MNESCSSSTN TSESPPPLRL SRLSSANSSV ILDIENGIET ESRNKLPSSK FKGVVPQPNG 60 RWGAQIYEKH QRVWLGTFNL QQDAASAYDI AARRFRGPDA LTNFINPPLQ PAESAFLESH 120 SKSEIVDMLR KHTYADEFEQ SKKRFYSVNQ NDVVAMSLNL NLKSSREILF EKTVTPSDVG 180 KLNRLVIPKQ YAEKHFPLPL TSNGVLINLE DLTGKMWRFR YSYWNSSQSY VLTKGWSRFV 240 KEKNLRAGDV VMFQRSTGLN RELFIDWKSR SDPVKVMVRL FGVDIMQNDV GVVCGGKRSR 300 DVDLFALRCS KKQAIINVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-54 | 167 | 271 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00025 | PBM | Transfer from AT1G68840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA39G00678 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002890683.1 | 1e-160 | AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
Swissprot | P82280 | 1e-156 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | D7KQU4 | 1e-159 | D7KQU4_ARALL; Uncharacterized protein | ||||
STRING | scaffold_102941.1 | 1e-159 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-151 | related to ABI3/VP1 2 |