PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA39G00657 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 213aa MW: 25106.3 Da PI: 8.6357 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.5 | 5.5e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss AA39G00657 9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSNKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 71.3 | 3e-24 | 68 | 161 | 3 | 97 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++ + ++ ++ +++ e+++Lk++ie L+++qRh+ GedL+s+slkeLq+Le+qL+++lk+iR++K + +e+i ++q+ + e+q++ + +++ AA39G00657 68 ERQLIAPTSDQNTNWSIEYNRLKAKIELLEKNQRHYEGEDLDSMSLKELQNLEHQLDTALKHIRTRKIKE-REKILKTQQNQWEQQNNVVQVHQQ 161 5666666777899******************************************************886.455555555555555555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.5E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.604 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.93E-39 | 2 | 62 | No hit | No description |
SuperFamily | SSF55455 | 6.67E-31 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-19 | 76 | 154 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.168 | 79 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FSKRRAGLLK KAHEISVLCD ADVALIVFSN KGKLFEYSSD 60 SNWYSYAERQ LIAPTSDQNT NWSIEYNRLK AKIELLEKNQ RHYEGEDLDS MSLKELQNLE 120 HQLDTALKHI RTRKIKEREK ILKTQQNQWE QQNNVVQVHQ QYQHLYMNPN HTSHFLNMGG 180 LNQEEEDPRT MRSNNLDLTL EPIYNFNLGC FAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-19 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 3e-19 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 3e-19 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 3e-19 | 1 | 59 | 1 | 59 | MEF2C |
6byy_A | 3e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 3e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 3e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 3e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 3e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 3e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 3e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 3e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA39G00657 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105460.1 | 1e-105 | PREDICTED: floral homeotic protein APETALA 1 | ||||
Refseq | XP_013652316.1 | 1e-105 | floral homeotic protein APETALA 1 | ||||
Swissprot | P0DI14 | 1e-106 | AP1_BRARP; Floral homeotic protein APETALA 1 | ||||
TrEMBL | A0A0C5PW81 | 1e-104 | A0A0C5PW81_LEPSV; Apetala 1 | ||||
STRING | Bostr.10273s0459.1.p | 1e-106 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM792 | 25 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-99 | MIKC_MADS family protein |