PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA39G00621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | G2-like | ||||||||
Protein Properties | Length: 250aa MW: 28688.3 Da PI: 6.8051 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.9 | 1.5e-30 | 17 | 71 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rl+W++eLH+rF++av+qLGG++kAtPk+++++m+++gLtl+++kSHLQkYR AA39G00621 17 KSRLKWSHELHNRFIDAVNQLGGPHKATPKSLMRVMEIPGLTLYQLKSHLQKYRK 71 68****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.499 | 14 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-27 | 16 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-22 | 17 | 73 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 7.17E-16 | 17 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-7 | 19 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.1E-15 | 107 | 154 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDDKRIKKLL MSSKEFKSRL KWSHELHNRF IDAVNQLGGP HKATPKSLMR VMEIPGLTLY 60 QLKSHLQKYR KRQGFGDNKQ AAETLEAGNQ GEITVTEEKD DETKEIVQTK EELQTEVEVQ 120 KQLHQEIKVQ RNLQVRIEAE GKYLDSVLMK AQETLSGYTS WTLRSCASSS FSGLTQDEDD 180 GTKRFLESKK PENRGIRETR SSVDSSLTSL ESSEIEMVTE EVKKRSWNDA VCVQEPPNQH 240 LELSLNSFKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-18 | 17 | 70 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-18 | 17 | 70 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-18 | 17 | 70 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-18 | 17 | 70 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA39G00621 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020868747.1 | 4e-76 | myb family transcription factor PHL8-like isoform X2 | ||||
Swissprot | F4I274 | 3e-73 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | V4KSL8 | 2e-73 | V4KSL8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415961.1 | 3e-74 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3878 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.2 | 2e-64 | G2-like family protein |
Publications ? help Back to Top | |||
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