PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00617
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 361aa    MW: 40952 Da    PI: 6.4016
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00617genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.3e-52101371128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 l pGfrFhPtdeelv++yLk+kv++++l++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++
  AA39G00617  10 LLPGFRFHPTDEELVSFYLKRKVQHHPLSI-QLITQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGNK 107
                 579***************************.89***************7777889***************************************95666 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +glkk+Lvfykgra kg+ktdW+mhe+rl
  AA39G00617 108 CIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 137
                 7***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-608164IPR003441NAC domain
PROSITE profilePS5100558.25210164IPR003441NAC domain
PfamPF023651.2E-2512137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGDEKMEEIL LPGFRFHPTD EELVSFYLKR KVQHHPLSIQ LITQLDIYKY DPWDLPKFAM  60
TGEKEWYFYC PRDRKYRNSA RPNRVTGAGF WKATGTDRPI YSSEGNKCIG LKKSLVFYKG  120
RAAKGVKTDW MMHEFRLPSP SSNTFLQSPL SQNDSWAVCR IFKKTNTTAL RALSHSFVSP  180
ETSNDTITSD KKPLNTTPFS SDKTSSYFSF TTSSSTVPPP APAPVPTSNP FSYLDFTSYD  240
KPTNVFNPVS CLDQQYLTNL ILATQETQTG DDISSFLLNM TSDSSFLGEY PSHVDLSAIL  300
AQEQCPALVS LPQEYDQEKR QMKNFEDGDE HVLKQNMRLL ESYYSPLTSS NGDLSSCFST  360
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-591016820172NAC domain-containing protein 19
3swm_B8e-591016820172NAC domain-containing protein 19
3swm_C8e-591016820172NAC domain-containing protein 19
3swm_D8e-591016820172NAC domain-containing protein 19
3swp_A8e-591016820172NAC domain-containing protein 19
3swp_B8e-591016820172NAC domain-containing protein 19
3swp_C8e-591016820172NAC domain-containing protein 19
3swp_D8e-591016820172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00617
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603948.10.0PREDICTED: protein FEZ-like
RefseqXP_022546503.10.0protein FEZ-like
SwissprotQ9ZVH01e-178FEZ_ARATH; Protein FEZ
TrEMBLA0A078JFQ01e-180A0A078JFQ0_BRANA; BnaCnng46350D protein
TrEMBLA0A0D3DR821e-180A0A0D3DR82_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FW461e-180A0A3P6FW46_BRAOL; Uncharacterized protein
STRINGBo8g076410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-168NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]