PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00606
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 180aa    MW: 21377.1 Da    PI: 8.4513
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00606genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.5e-1968121356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ eq+++Le+ Fe ++++  e++ eLA+ lgL+ rq+ +WFqNrRa++k
  AA39G00606  68 KKRRLNIEQVKTLEKSFEIDNKLEPERKLELAHALGLKPRQIAIWFQNRRARWK 121
                 4557899**********************************************9 PP
2HD-ZIP_I/II121.54.3e-3967156190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  ekkrrl+ eqvk+LE+sFe ++kLeperK ela++Lgl+prq+a+WFqnrRAR+ktkqlEkdy++L+r++++lk+en+ L +++++L+++
   AA39G00606  67 EKKRRLNIEQVKTLEKSFEIDNKLEPERKLELAHALGLKPRQIAIWFQNRRARWKTKQLEKDYDSLHRQIQSLKDENQFLLTQNQKLQAQ 156
                  69*************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-1953125IPR009057Homeodomain-like
PROSITE profilePS5007117.0763123IPR001356Homeobox domain
SMARTSM003897.7E-1866127IPR001356Homeobox domain
CDDcd000864.22E-1568124No hitNo description
PfamPF000464.1E-1668121IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-2070131IPR009057Homeodomain-like
PRINTSPR000316.2E-694103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000316.2E-6103119IPR000047Helix-turn-helix motif
PfamPF021832.1E-7123156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSCNNNLSFF PSNFILQPEI PFPISDFASS PRIFRTDPVG FLGKRSFNSM TTYSGEEEFT  60
FSEDVVEKKR RLNIEQVKTL EKSFEIDNKL EPERKLELAH ALGLKPRQIA IWFQNRRARW  120
KTKQLEKDYD SLHRQIQSLK DENQFLLTQN QKLQAQYFST TTTMNEQSGL WSWLDQQHYQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00606
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013690910.18e-55homeobox-leucine zipper protein ATHB-13-like isoform X2
SwissprotQ8LC037e-53ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A3N6RJW24e-52A0A3N6RJW2_BRACR; Uncharacterized protein
STRINGBra007881.1-P2e-52(Brassica rapa)
STRINGXP_006415983.12e-52(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-55HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]