PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00533
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TALE
Protein Properties Length: 344aa    MW: 38836.7 Da    PI: 4.4612
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00533genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-082883212255
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  AA39G00533 288 WPYPTEGDKIALADATGLDQKQINNWFINQRKRH 321
                 59*****************************885 PP
2ELK30.96.2e-11241262122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK++LlrK++++++sLk EFs
  AA39G00533 241 ELKNRLLRKFGSRISSLKLEFS 262
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-2183127IPR005540KNOX1
PfamPF037905.9E-2285126IPR005540KNOX1
SMARTSM012569.6E-24134185IPR005541KNOX2
PfamPF037911.4E-22138184IPR005541KNOX2
PROSITE profilePS5121310.057241261IPR005539ELK domain
SMARTSM011883.5E-5241262IPR005539ELK domain
PfamPF037891.3E-7241262IPR005539ELK domain
PROSITE profilePS5007112.244261324IPR001356Homeobox domain
SuperFamilySSF466897.7E-19262334IPR009057Homeodomain-like
SMARTSM003892.7E-12263328IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-27266325IPR009057Homeodomain-like
CDDcd000861.72E-11270325No hitNo description
PfamPF059206.3E-17281320IPR008422Homeobox KN domain
PROSITE patternPS000270299322IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDGMYDFHSV GDYSEKSALM MSPESLMLPC DYQTLLCSSA GENRVSDVYG SDELLSAAAS  60
ALPSESASIA PEIRQTEDDV SLGVIKAKIA WHPLYPRLLQ AYIDCQKVGA PPEIACLLEE  120
IQQESDVYKR DVAQSSSFGA DPELDEFMET YTDILVKYKS DLARPFDEAT SFLNNIELQL  180
RNLCTGVASA EGFSGFNSLI VVDLKYSFSL YLDEGVISSD EELSGGDEVI QDGKQRCEDR  240
ELKNRLLRKF GSRISSLKLE FSKKKKKGKL PREARQALLD WWSIHYKWPY PTEGDKIALA  300
DATGLDQKQI NNWFINQRKR HWKPSENMPY AMMEDSNGSF FTEE
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00533
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723614e-95AB072361.1 Arabidopsis thaliana KNAT6S mRNA for homeodomain transcription factor KNAT6, complete cds.
GenBankAB0723624e-95AB072362.1 Arabidopsis thaliana KNAT6L mRNA for homeodomain transcription factor KNAT6, complete cds.
GenBankBT0029304e-95BT002930.1 Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds.
GenBankBT0043704e-95BT004370.1 Arabidopsis thaliana clone U20256 putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850951.20.0homeobox protein knotted-1-like 6
SwissprotQ84JS60.0KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1J3I5Y40.0A0A1J3I5Y4_NOCCA; Homeobox protein knotted-1-like 6
STRINGAT1G23380.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.10.0KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]