PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00356
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 597aa    MW: 67214 Da    PI: 4.7911
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00356genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.13.6e-1312275972374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL+ cA+ +s+g+  +a +++++l++l+s +gdp qR+aay++e+Laa++a s++ lykal+++e +   s+e+laa+++++ev+P++kf++l+aN+
  AA39G00356 227 KQLLICCARELSEGNSDEALSMVNKLRTLVSIQGDPSQRIAAYMVEGLAAKMAASGKFLYKALKCKEPP---SDERLAAMQVLFEVCPCFKFGFLAANS 322
                 589*****************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aI ea++ +e+vHiiDfdi+qG Q+++L+q+La+ p++ p+lR+Tgv++pes+  s+  l+ +g rL+++A+  g++++f++ + ++++ +++++L++k
  AA39G00356 323 AIIEAIKDQEQVHIIDFDINQGNQYMTLIQSLANLPGKHPRLRLTGVDDPESVqrSTGGLRIIGLRLEQLAKDHGISLKFKA-IPSKTSIISPRTLNCK 420
                 ***************************************************9999999************************.799************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 p+E+l+Vn+++qlh+++desvs+ +erd++L++vk+l+Pk+v+vveq++++n+++F+ rf+ea eyysa+f+sl+ +lpr+s+er++vEr++l+r+ivn
  AA39G00356 421 PEETLIVNFAFQLHHMPDESVSTVNERDQLLHMVKTLNPKLVTVVEQDVNTNTSPFFSRFMEAYEYYSAVFESLDLTLPRDSQERMNVERQCLARDIVN 519
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +vaceg+er+er e ++kWr+r+ +aGF + p+s+++ k+++ ++++ + + ++v+ee g l ++W++++L+++SaW+
  AA39G00356 520 IVACEGEERIERYEVAGKWRARMAMAGFVTEPMSSRVSKEMEKIIKEEYCNRFKVKEEMGGLHFCWEEKSLIVASAWK 597
                 *************************************************777*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.109200577IPR005202Transcription factor GRAS
PfamPF035141.2E-128227597IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MVEQTVIREH NKGRVMSLVR SVEPSAASYG NPKVYSLNDN GNNGGVSAQI FDSDRSKNTC  60
LTDSYSSQSY EKYFLDSPTE EFVHSLASTV SISNSFESSP YQSTPVLGCS MEFQTPFDST  120
TSASPRLFRD YQGEFEAVCL QSPTMDVLEF DDDEMKSKIQ ELERVLLEDE DEKMLGIDHL  180
MEIDNEWSSE QHQNSPKETS SADSNSHVTS ICNKEVLSQT SSTTTPKQLL ICCARELSEG  240
NSDEALSMVN KLRTLVSIQG DPSQRIAAYM VEGLAAKMAA SGKFLYKALK CKEPPSDERL  300
AAMQVLFEVC PCFKFGFLAA NSAIIEAIKD QEQVHIIDFD INQGNQYMTL IQSLANLPGK  360
HPRLRLTGVD DPESVQRSTG GLRIIGLRLE QLAKDHGISL KFKAIPSKTS IISPRTLNCK  420
PEETLIVNFA FQLHHMPDES VSTVNERDQL LHMVKTLNPK LVTVVEQDVN TNTSPFFSRF  480
MEAYEYYSAV FESLDLTLPR DSQERMNVER QCLARDIVNI VACEGEERIE RYEVAGKWRA  540
RMAMAGFVTE PMSSRVSKEM EKIIKEEYCN RFKVKEEMGG LHFCWEEKSL IVASAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-542285976375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00356
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498602.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLD7KK120.0D7KK12_ARALL; Uncharacterized protein
STRINGXP_010498602.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]