PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00249
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 468aa    MW: 51372.8 Da    PI: 4.912
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00249genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.2e-06415437426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C++f  +  C++G++C++ H+
  AA39G00249 415 KPCMYFNSSRGCRRGANCQYQHD 437
                 69********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.404411439IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5415438IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-5415437IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MRALQKSKRV SWPPDFKLCQ ERQGLILRYS HFHHGLVSLK PCTDEIHVVN LGRGGEEEDG  60
IGKNVVPAFF ILFISWDVMN FEVRLFISDD SPSQVGSESQ DHLQAKSPWA SHPSDDNLPP  120
GFGGPHPGES QIKLSDIPVI KWKCSGRIML DEDWRVVAGD ESEEVDAQNQ RDLRVLEAFY  180
PGASSIPPNP SVPADDENLR YDDHQTVVIP ILPVEDDDMM NDASSDFANQ SATDAGTQPS  240
VTDESSSNAS TLPAGSEIMA ALSAITSKDQ GSMIDQDLLL KILSNPKLVE NLVANAGAGS  300
VSNASSVYPT SSAPETNGVV TTAPASSNGQ FYPQSTGPPM VYPPAQPEQP NYGAAPARDA  360
NYYKNLIHQH GAERHETPPA QHLGYHYNVQ PGAPNPEMVN GNNPRPRDSK PKIMKPCMYF  420
NSSRGCRRGA NCQYQHDDTP YQPRSQNNVN NINTSEIQNA KRMRFDRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00249
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001323091.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A1P8AW260.0A0A1P8AW26_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGAT1G19860.10.0(Arabidopsis thaliana)
STRINGfgenesh2_kg.1__2165__AT1G19860.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.25e-06HB-other family protein
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]