PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA39G00248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ARF | ||||||||
Protein Properties | Length: 896aa MW: 99040.6 Da PI: 5.7302 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77 | 2e-24 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ +++++ +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F ++++ +l AA39G00248 156 FCKTLTASDTSTHGGFSVPRRAAEKLfpsldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQL 250 99*********************999****996444444..8************************************************..4577778 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ AA39G00248 251 MVGVRRA 257 *****97 PP | |||||||
2 | Auxin_resp | 112 | 5.9e-37 | 282 | 365 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++++F+++YnPra+++eFv++++k++ka+ +++svGmRf m+feteds +rr++Gt+vg+sdldp+rW +SkWr+L+ AA39G00248 282 AAHATANRTPFTIFYNPRACPAEFVIPIAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWAGSKWRNLQ 365 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-45 | 146 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-41 | 148 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.27E-22 | 155 | 256 | No hit | No description |
PROSITE profile | PS50863 | 13.155 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-22 | 156 | 257 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.1E-25 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.6E-32 | 282 | 365 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.1E-9 | 778 | 873 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.437 | 787 | 871 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.59E-7 | 801 | 866 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 896 aa Download sequence Send to blast |
MASLASIEEK MKSNGPTTTT TTNSQSSLIE EMKLLKEMQD QSGTRKPVIN SELWHACAGP 60 LVCLPQVGSL VYYFSQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN VTLHADKDSD 120 EIYAQMSLQP VHSERDVFPV PDFGMLRGSK HPAEFFCKTL TASDTSTHGG FSVPRRAAEK 180 LFPSLDYTAQ PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV 240 LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFTIFYNPRA 300 CPAEFVIPIA KYRKAICGSQ LSVGMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWAGSK 360 WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRPLHPSYF AGETEWGNLI 420 KRPLIRISDA ANGILPYSSF PNMASEQLMK MMMKPHNNTN AASLMSEMQH TMIGHGVLQS 480 DLKMQQPVMN QKVEVVQQEH KLTVNSTSSM TSAQEQNLSQ SMSAGTKADK PALSGCSSGR 540 LKHDPEQSIE QASQMTTVTG CNEEKVNQMS QKPGLLSPLQ SDPCPEISQQ IYPPQSDPIS 600 FNGLSFLETD ELASQVSSFQ SLASPYKQPL MLGSQDSSAV MLPDSANSSL FHDVWDNQLS 660 GLKFDQFSPL TQQDLYACQN ICMSNSTTSN ILDPPLSNTV LDEFCAMKET DFQNPSSCMV 720 GNTSFTQDVQ SQITSASFAD SQAFSRQDFP DNSGGTGTSS SNVDFDESSL LQNSKSSWQK 780 VATPRVRTYT KVQKAGSVGR SIDVTSFRDY EELKSAIECM FGLEGLLTNP QSSGWKLVYV 840 DYESDVLLVG DDPWEEFVGC VRCIRILSPT EVQQMSEEGM KLLNSAGMND IKTSVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 390 | 2 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA39G00248 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020866993.1 | 0.0 | auxin response factor 5 isoform X1 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A087H7S5 | 0.0 | A0A087H7S5_ARAAL; Auxin response factor | ||||
STRING | A0A087H7S5 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |