PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA39G00217 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 349aa MW: 38133.4 Da PI: 9.3381 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 156.3 | 2.1e-48 | 16 | 89 | 2 | 75 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskp 75 +++rkp+w+ErEnn+rRERrRRa+aakiy+GLRaqGny+lpk++DnneVlkALc+eAGwvve+DGttyrk ++ AA39G00217 16 AARRKPSWRERENNRRRERRRRAVAAKIYSGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKVNSH 89 689******************************************************************98776 PP | |||||||
2 | DUF822 | 33.9 | 1.1e-10 | 107 | 174 | 71 | 141 |
DUF822 71 kgskpleeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvls 141 +gskp+++ ++ag+s++++p ss ++s+ ss+++sp++sy+ sp+sssfpsps+ d +++ +++p+l+ AA39G00217 107 EGSKPPSSFDMAGTSSRVTPYSSHNQSPLSSTFESPIPSYQVSPSSSSFPSPSRGDPHNIS---TIFPFLR 174 5899999*************************************************99996...5666555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 4.2E-59 | 17 | 164 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MTSDGATSTS AAAAMAARRK PSWRERENNR RRERRRRAVA AKIYSGLRAQ GNYNLPKHCD 60 NNEVLKALCA EAGWVVEEDG TTYRKVNSHA LALDLMLFVD VLAVGSEGSK PPSSFDMAGT 120 SSRVTPYSSH NQSPLSSTFE SPIPSYQVSP SSSSFPSPSR GDPHNISTIF PFLRSGIPSS 180 LPPLRISNSA PVTPPVSSPT SKNPKPLPTW ESFTKQSMTI AKQSMNSFNY PFYAVSAPAS 240 PTHRQFHAPA TIPECDESDS STVDSGHWIS FQKFSQQPFH GSGVPTSPTF NLVKPAPQQL 300 SRNTATQEIG QSSEFKFENS QVKPWEGERI HDVGMEDLEL TLGNSKARS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 2e-27 | 18 | 85 | 371 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 2e-27 | 18 | 85 | 371 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 2e-27 | 18 | 85 | 371 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 2e-27 | 18 | 85 | 371 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 17 | 36 | RRKPSWRERENNRRRERRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Positive regulator of brassinosteroid (BR) signaling. Transcription factor that activates target gene expression by binding specifically to the DNA sequence 5'-CANNTG-3'(E box) through its N-terminal domain. Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BIM1, BIM2 or BIM3. The C-terminal domain is probably involved in transcriptional activation (PubMed:12007405, PubMed:15680330, PubMed:18467490, PubMed:19170933). Recruits the transcription elongation factor IWS1 to control BR-regulated gene expression (PubMed:20139304). Forms a trimeric complex with IWS1 and ASHH2/SDG8 to regulate BR-regulated gene expression (PubMed:24838002). Promotes quiescent center (QC) self-renewal by cell divisions in the primary root. Binds to the E-boxes of the BRAVO promoter to repress its expression (PubMed:24981610). {ECO:0000269|PubMed:12007405, ECO:0000269|PubMed:15680330, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20139304, ECO:0000269|PubMed:24838002, ECO:0000269|PubMed:24981610}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00073 | ChIP-chip | Transfer from AT1G19350 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA39G00217 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC025808 | 1e-177 | AC025808.8 Genomic sequence for Arabidopsis thaliana BAC F18O14 from chromosome I, complete sequence. | |||
GenBank | AY065041 | 1e-177 | AY065041.1 Arabidopsis thaliana At1g19350/F18O14_4 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-177 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010459601.1 | 1e-174 | PREDICTED: protein BRASSINAZOLE-RESISTANT 2 isoform X1 | ||||
Refseq | XP_019091725.1 | 1e-174 | PREDICTED: protein BRASSINAZOLE-RESISTANT 2 isoform X2 | ||||
Swissprot | Q9LN63 | 1e-173 | BZR2_ARATH; Protein BRASSINAZOLE-RESISTANT 2 | ||||
TrEMBL | F4HP45 | 1e-171 | F4HP45_ARATH; Brassinosteroid signaling positive regulator (BZR1) family protein | ||||
TrEMBL | R0GQL6 | 1e-170 | R0GQL6_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.7128s0539.1.p | 1e-174 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2472 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19350.3 | 1e-150 | BES1 family protein |