PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00087
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 704aa    MW: 78072.4 Da    PI: 6.2867
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00087genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-193186156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ +++t++q+++Le+ F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  AA39G00087 31 KKRYHRHTAQQIQRLESTFNECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQKK 86
                688999***********************************************988 PP
2START155.83.6e-492264462206
                 HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 +a +a+qel+k+++ +ep+W k     +++n + +  +f++s         ++ea+r sgvv+ ++ +lv  ++d+  +W e ++    + +tl+ is 
  AA39G00087 226 IAMAAMQELLKLIQTNEPLWIKTDgcrDILNLESYDNIFPRSSRrgknqnLRIEASRSSGVVFTNALTLVDMFMDSV-KWGELFPpiiaASKTLAMISI 323
                 57799******************99**************99887999999***************************.*******9**9********** PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS.XXH CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr.lph 178
                 g       a++lm  e q+lsplv+ R+f ++Ry++q + g+w++v vS + +q+ +      R+++lpSg+li++++ng+skvtw+ehv+ +++ l+ 
  AA39G00087 324 GmggsrgDAVHLMLEEHQVLSPLVAtREFCVLRYCQQIEHGTWAVVNVSYELPQFISH----SRSHKLPSGCLIQDMPNGYSKVTWIEHVEIEEQeLIN 418
                 ******9************************************************875....9*****************************987367* PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +++r  ++ gla+ga +w+atlqr ce+
  AA39G00087 419 EMYRESIHEGLAFGAERWLATLQRTCER 446
                 **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-231190IPR009057Homeodomain-like
SuperFamilySSF466892.72E-201688IPR009057Homeodomain-like
PROSITE profilePS5007118.0422888IPR001356Homeobox domain
SMARTSM003894.6E-182992IPR001356Homeobox domain
PfamPF000462.6E-173186IPR001356Homeobox domain
CDDcd000861.75E-183189No hitNo description
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PROSITE profilePS5084849.376216449IPR002913START domain
SuperFamilySSF559613.02E-30217446No hitNo description
CDDcd088757.61E-101220445No hitNo description
SMARTSM002344.5E-44225446IPR002913START domain
PfamPF018523.1E-41226446IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-7278412IPR023393START-like domain
SuperFamilySSF559611.65E-17468694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010091Biological Processtrichome branching
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MEFISGGGGI GNGGDNGGNQ HQDGSDAQKK KKRYHRHTAQ QIQRLESTFN ECPHPDEKQR  60
MQLSRELGLA PRQIKFWFQN RRTQKKAQHE RADNCALREE NDKIRCENIA IREALKHAIC  120
PNCGDAPLNE DSYFDEQKLR IENAQLRDEL ERVSSIAAKY IGRPISHLPP LHSMQMTPLD  180
FSMPSLGGSS LDFDLLPGSC SMALPNFPSQ PNLVLSDMDK SLMTDIAMAA MQELLKLIQT  240
NEPLWIKTDG CRDILNLESY DNIFPRSSRR GKNQNLRIEA SRSSGVVFTN ALTLVDMFMD  300
SVKWGELFPP IIAASKTLAM ISIGMGGSRG DAVHLMLEEH QVLSPLVATR EFCVLRYCQQ  360
IEHGTWAVVN VSYELPQFIS HSRSHKLPSG CLIQDMPNGY SKVTWIEHVE IEEQELINEM  420
YRESIHEGLA FGAERWLATL QRTCERVRTL LEPTPSSHGL GEVTPSLEGK RSLMRLAQRM  480
VSNFCLSVST SNHTGSTVVI GLNEAGVRVT SHKSHEPNGT VLCAATTFWL PISLQNVFNF  540
LKDERTRPQW DVLSNGNSVQ EVAHIANGSN PGNCISVLRT INGSENNMLI LQESCIDSSG  600
ALVVYTPVDL AGLNIAMSGE DSSYIPILPS GFAISPDGTN SNRGVNEEEE GERRGGSLIT  660
VAFQIMVSSL QSGKLNMESM STVNNLISTT VHQIKTTLNS HTTT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00087
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537520.10.0PREDICTED: homeobox-leucine zipper protein HDG11
SwissprotQ9LMT80.0HDG12_ARATH; Homeobox-leucine zipper protein HDG12
TrEMBLA0A178WQ450.0A0A178WQ45_ARATH; HDG12
STRINGXP_010537520.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30042665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.10.0homeodomain GLABROUS 12
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]