PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00006
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family STAT
Protein Properties Length: 676aa    MW: 76574.7 Da    PI: 5.1953
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00006genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT167.52.6e-522263401112
        STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks..ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk.yp 96 
                 ldvvl+na+gq+v+kdv++vasLlyad+ ++vek+  +++e+pLL+sy+Gve+s+ed p  ll+G+asfklki+qLssk+++rLf+ikfei ++k  yp
  AA39G00006 226 LDVVLSNAIGQSVHKDVKIVASLLYADNKTPVEKTseSESESPLLVSYEGVELSAEDTPYMLLNGCASFKLKIAQLSSKSEKRLFCIKFEIVEVKGcYP 324
                 8*********************************96667899*****************************************************99** PP

        STAT  97 fleavskpirCisrsr 112
                 flea++++irC+sr+ 
  AA39G00006 325 FLEAFTNQIRCVSRNP 340
                 **************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2004.5E-424144IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498994.91E-729165IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103388.77E-56567676No hitNo description
Gene3DG3DSA:3.30.505.105.0E-7574630IPR000980SH2 domain
SuperFamilySSF555508.35E-10575666IPR000980SH2 domain
PROSITE profilePS5000111.413581676IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MAGDSAIDTE KYTLLEDFNV DVEVENHEFK SFSLCFWVYL LDSTTYPSTI IRQVHSDMSV  60
SAPFLVLNEN KNMMLLPLNL LHKEAPDPIN TASWTEVPNV STKSEFPLQK WVHVGCEVSK  120
NYIRLHISGE IVGEQSLTSL MANGSSLECV RKISLFSVGG DGYSVQGFIH GAEILPANVP  180
VKHHYMKDPP LVLSIDNPHT SGIELDEDGV WSIVGGKASC RKIFSLDVVL SNAIGQSVHK  240
DVKIVASLLY ADNKTPVEKT SESESESPLL VSYEGVELSA EDTPYMLLNG CASFKLKIAQ  300
LSSKSEKRLF CIKFEIVEVK GCYPFLEAFT NQIRCVSRNP LYATLKRLNP LDGVPVVTSS  360
NGISEILHMK RVKLAEEKTS ESDESYEQCK QFEWRGENHE EDNSSTDSDN TETMRDSDFR  420
RYTISDSTIF RYCLGNLTER SLLLKEITSN SSDEQVSNFA DQVSLYSGCS HHSYQIKMAR  480
ELIAEGTNAW ILISRNNQHV HWDSVMYEIE EHFMRIAKCC SRSLTHQDFE ILRRISGCCY  540
EYITQENFEK MWCWLYPVAS SISRGLMNGM WRSSSLSSPK WIEGFVTKED AEESLVQEQE  600
PGTFILRFPT SRSWPHPDAG SLVVTYVAQD FTIRHRLLRI DHICNASERY TDAKPLQDLI  660
LAEPELSKLG KIMRSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008335.10.0SH2 domain-containing protein A
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLV4KYL30.0V4KYL3_EUTSA; Uncharacterized protein
STRINGXP_006416749.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]