PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA38G00101

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

WRKY

Protein Properties

Length: 322aa MW: 36180.6 Da PI: 7.9738

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA38G00101	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.3	1.6e-28	159	218	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg++ pr+YYrC+ + +Cpv+k+v+r+ ed++++ +tYeg+H+h+ AA38G00101 159 MQDGCQWRKYGQKIAKGNPRPRAYYRCSISpNCPVRKQVQRCGEDKSALLTTYEGNHDHS 218 58************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.0E-30	144	220	IPR003657	WRKY domain
SuperFamily	SSF118290	7.98E-26	153	220	IPR003657	WRKY domain
PROSITE profile	PS50811	28.059	154	220	IPR003657	WRKY domain
SMART	SM00774	3.7E-32	159	219	IPR003657	WRKY domain
Pfam	PF03106	1.3E-24	160	217	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
EEEVELESTK AKVCEVREEN EKLKLLLSTI LTDYNSLQTH LSHLLRQQQH TSPMNLEEKH 60 YNNDSYTSPL DISLSLGRSK KQKKLSKDEQ GDKILDDESE TMKLYNVYRE VKDEKAESKC 120 LVVKKDIRNI RSEVFEENEQ PSFKKTRVCV KATCEGTLMQ DGCQWRKYGQ KIAKGNPRPR 180 AYYRCSISPN CPVRKQVQRC GEDKSALLTT YEGNHDHSLP LEATHMAAAT SAAASVLQCG 240 SSSSSFSLSH EAALAYFFPS HHISVSTTNS HPTVTLDLTR AAYTGKLPKY PPSLTTSPTL 300 NFSSSEKTPS LYGHTLSFSG FN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-23	150	220	8	77	Probable WRKY transcription factor 4
2lex_A	9e-23	150	220	8	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA38G00101

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013732506.1	1e-108	probable WRKY transcription factor 36
Swissprot	Q9CAR4	1e-103	WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBL	A0A078JTU7	1e-106	A0A078JTU7_BRANA; BnaCnng60780D protein
STRING	Bo2g064630.1	1e-106	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13913	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69810.1	3e-95	WRKY DNA-binding protein 36

Publications ? help Back to Top
Yang Y, et al. UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis. Nat Plants, 2018. 4(2): p. 98-107 [PMID:29379156]