PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA38G00045 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | TALE | ||||||||
Protein Properties | Length: 326aa MW: 36866.4 Da PI: 4.8763 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.6 | 1e-08 | 269 | 303 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ ++ LA+ +gL+++q+ +WF N+R ++ AA38G00045 269 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 303 569*****************************885 PP | |||||||
2 | ELK | 31.7 | 3.4e-11 | 223 | 244 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++LlrK++++++sLk EFs AA38G00045 223 DLKDRLLRKFGSHISSLKLEFS 244 69*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.1E-22 | 83 | 127 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.8E-21 | 85 | 126 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.5E-25 | 134 | 185 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.1E-24 | 138 | 184 | IPR005541 | KNOX2 |
SMART | SM01188 | 1.6E-5 | 223 | 244 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.847 | 223 | 243 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.5E-8 | 223 | 244 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.341 | 243 | 306 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-19 | 244 | 316 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-12 | 245 | 310 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-27 | 248 | 307 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.16E-11 | 252 | 307 | No hit | No description |
Pfam | PF05920 | 2.9E-17 | 263 | 302 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 281 | 304 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MDGMCGYHST GDYSEKAAMM VSSENLMMPS HYQTMLYSSA EDNRVSDVYG SNELLSAAAS 60 ALSSEAVSIA THIRRAEDNV TLGVIKAKIA CHPFYPRLLQ AYIDCQKVGA PVEIACLLEE 120 IQRESDVYKR DVAPLSCLGA DPELDDFMET YCEILIKYKS DLARPFDEAT TFLNKIEVQL 180 QNLCTGPAST RGVSDDGTIS SDEELRGGDD IVQDSQQRSN DRDLKDRLLR KFGSHISSLK 240 LEFSKKKKKG KLPREARQAL LDWWNVHYKW PYPTEGDKIA LADATGLDQK QINNWFINQR 300 KRHWKPSENM PFSMVDDSSE TFYTEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA38G00045 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_850951.2 | 0.0 | homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 0.0 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A1J3I5Y4 | 0.0 | A0A1J3I5Y4_NOCCA; Homeobox protein knotted-1-like 6 | ||||
STRING | AT1G23380.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 1e-174 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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