PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA37G00143
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 329aa    MW: 37441.3 Da    PI: 6.6131
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA37G00143genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-1247102255
         AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV++++++gr++A+++d  s+n  ++k+ + g ++ +e Aa+a++ a++k++g
  AA37G00143  47 AYRGVTRHRWTGRYEAHLWDkNSWNEtQSKKGRQGAYDEEEAAARAYDLAALKYWG 102
                 69******************88889998888888********************98 PP
2AP250.64.9e-16145197156
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 s+++GV  ++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g+
  AA37G00143 145 SKFRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRGH 197
                 79****************99966...3.6**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.9E-1546112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-1247111IPR001471AP2/ERF domain
SMARTSM003805.0E-2047116IPR001471AP2/ERF domain
PROSITE profilePS5103218.92747110IPR001471AP2/ERF domain
PfamPF008477.8E-947102IPR001471AP2/ERF domain
PRINTSPR003673.2E-64859IPR001471AP2/ERF domain
CDDcd000187.90E-14145206No hitNo description
SuperFamilySSF541713.86E-17145206IPR016177DNA-binding domain
PfamPF008475.9E-11145197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-17146204IPR001471AP2/ERF domain
SMARTSM003801.2E-25146210IPR001471AP2/ERF domain
PROSITE profilePS5103217.398146204IPR001471AP2/ERF domain
PRINTSPR003673.2E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
METISRRSKK TPVLDNESGE SASVVISKGK RKRRSQPRDA PPQRSSAYRG VTRHRWTGRY  60
EAHLWDKNSW NETQSKKGRQ GAYDEEEAAA RAYDLAALKY WGGDTILNFP LSTYEEDIKE  120
MENQSKEEYI GSLRRKSSGF SRGVSKFRGV AKHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAAIAYDIA AIEYRGHNAV TNFDISRYLK YPPPDNPNGV TNHLPENPDT DPNPFINPNL  240
EVELSQGHTS SDDNDDQKTK FLLLTSKTEE VIGPSTPPEI VPLRRSFPED IQTYFGCQDS  300
GKLTMEEDVI FGGLDSFISP HFYNEFNNC
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA37G00143
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416849.11e-176AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-164AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1J3HBM00.0A0A1J3HBM0_NOCCA; AP2-like ethylene-responsive transcription factor
TrEMBLA0A1J3IKB90.0A0A1J3IKB9_NOCCA; AP2-like ethylene-responsive transcription factor
STRINGA0A087HNZ00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-157ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]