PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA36G00050

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NF-YB

Protein Properties

Length: 359aa MW: 39495.9 Da PI: 4.6971

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA36G00050	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	96.5	2.3e-30	34	135	3	93
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse...........asdkcqrekrktingddllwalatlGfedyveplkvylkky 90 e+dr+lP nv+rim+ lP +aki + ake + + vsefi +tse a+ kcq++k+kt++gddll++++t+Gfe+y+epl++yl++y AA36G00050 34 EKDRLLPKINVTRIMRDCLPPKAKIFQGAKEAMVQYVSEFIHCITSEfdcvvhivtsrAAYKCQKDKKKTLDGDDLLMSMSTFGFENYIEPLQIYLQRY 132 89************************************976655444443333333999************************************ PP NF-YB 91 rel 93 re AA36G00050 133 REK 135 *95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.0E-33	30	156	IPR009072	Histone-fold
SuperFamily	SSF47113	4.97E-23	36	149	IPR009072	Histone-fold
Pfam	PF00808	9.5E-11	38	113	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-6	96	114	No hit	No description
PRINTS	PR00615	1.2E-6	115	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MADSKGTPSG MNPEGDEPHE GDEDQTPGSV NDGEKDRLLP KINVTRIMRD CLPPKAKIFQ 60 GAKEAMVQYV SEFIHCITSE FDCVVHIVTS RAAYKCQKDK KKTLDGDDLL MSMSTFGFEN 120 YIEPLQIYLQ RYREKSYVQQ NQAPQVSQPA DQSSGSQVLN ENSQFSEPIP QISFSQGPYE 180 NPQLLQPAQG CSSSQAPYGD PQVYQPSHQS SSSQVPNENY QVSQPVHPSY FPQDPYGVPQ 240 FSEPIPQIPF SQGPYGNPQF SQSAHPSYFP QDPYATPQFC QPAEQSSFLQ GSSGNSQFSQ 300 PAQQSSSSQV PNENSQFQCH LQNSSSSSSS RTSSSSSSSS FSSSSSSSSL SSSSYEKRR

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MADSKGTPSG MNPEGDEPHE GDEDQTPGSV NDGEKDRLLP KINVTRIMRD CLPPKAKIFQ  60
GAKEAMVQYV SEFIHCITSE FDCVVHIVTS RAAYKCQKDK KKTLDGDDLL MSMSTFGFEN  120
YIEPLQIYLQ RYREKSYVQQ NQAPQVSQPA DQSSGSQVLN ENSQFSEPIP QISFSQGPYE  180
NPQLLQPAQG CSSSQAPYGD PQVYQPSHQS SSSQVPNENY QVSQPVHPSY FPQDPYGVPQ  240
FSEPIPQIPF SQGPYGNPQF SQSAHPSYFP QDPYATPQFC QPAEQSSFLQ GSSGNSQFSQ  300
PAQQSSSSQV PNENSQFQCH LQNSSSSSSS RTSSSSSSSS FSSSSSSSSL SSSSYEKRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-24	34	134	3	92	Transcription factor HapC (Eurofung)
4g92_B	2e-24	34	134	3	92	Transcription factor HapC (Eurofung)

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA36G00050

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	2e-27	nuclear factor Y, subunit B10