PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA36G00045 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 14942.9 Da PI: 7.1292 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.6 | 1.7e-16 | 13 | 98 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 v+ + + + l +p +f +h + + ++t +++ ++W+v + rk+ + +++t GW+eF+++n+L +g+f++F +dg+++f v+++ AA36G00045 13 VF--LSESCTESLAIPLSFN-QHlRN--PLPRTAKFQGCGPKVWKVDM--RKREEYIYFTVGWQEFAEENDLTDGEFLTFVYDGSRTF--EVSIY 98 44..3444455699*****8.55243..4899****************..****99**************************997777..67665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-20 | 8 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-21 | 8 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.014 | 8 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.06E-15 | 8 | 99 | No hit | No description |
SMART | SM01019 | 1.4E-16 | 10 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-14 | 12 | 99 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MADNGILPRF FLVFLSESCT ESLAIPLSFN QHLRNPLPRT AKFQGCGPKV WKVDMRKREE 60 YIYFTVGWQE FAEENDLTDG EFLTFVYDGS RTFEVSIYNR YGCKETRGQG NQQVNFFCIF 120 QRVSQPKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 8e-24 | 1 | 103 | 3 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA36G00045 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293000.1 | 1e-43 | B3 domain-containing protein REM20 | ||||
Refseq | XP_006403705.1 | 1e-43 | B3 domain-containing protein REM20 | ||||
Swissprot | Q8LAV5 | 4e-37 | REM20_ARATH; B3 domain-containing protein REM20 | ||||
TrEMBL | R0HPM7 | 3e-42 | R0HPM7_9BRAS; Uncharacterized protein | ||||
TrEMBL | V4LZ34 | 2e-42 | V4LZ34_EUTSA; Uncharacterized protein | ||||
STRING | Cagra.0612s0056.1.p | 2e-43 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 2e-39 | B3 family protein |
Publications ? help Back to Top | |||
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