PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA36G00042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 252aa MW: 29145.1 Da PI: 6.6106 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.4 | 3.4e-15 | 11 | 97 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f v+++++ ++s+ +p +f e+ + ++ +k+ +l+ ++W+vk+ r+ +g + +t GW+ F+++n+Lk+g+f++F +dg ++f v+++ AA36G00042 11 FAVFLSESCTESA---IPSSFNEHLK--HPLPKKAKLQYCGQKVWKVKM--RQIQGDICFTHGWRLFAEENDLKDGEFLTFVYDGFRTF--EVTIY 97 5566566666665...9****85555..45999****************..*******************************9986666..55554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.026 | 7 | 100 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.1E-18 | 8 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.78E-15 | 8 | 98 | No hit | No description |
SMART | SM01019 | 5.4E-15 | 10 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-12 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-18 | 10 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-9 | 156 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-6 | 156 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.025 | 159 | 251 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MVNNGVLPRF FAVFLSESCT ESAIPSSFNE HLKHPLPKKA KLQYCGQKVW KVKMRQIQGD 60 ICFTHGWRLF AEENDLKDGE FLTFVYDGFR TFEVTIYNRY GCKENRSLVI QQDTMDGLVI 120 QQDTMDVDDR SDSCTETDNE ESDDAVANSA IEYLPNPCFQ TQIRNRKFEL LIPANVVSGY 180 HLRFGSCVNF IDETGILKGT KGNWTDQRIC FRGWNRICRR NKLKDDDIVT CELLHNQNLV 240 HSIKITIIHR ST |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 5e-14 | 9 | 102 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA36G00042 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002877911.1 | 5e-79 | B3 domain-containing protein REM20 | ||||
TrEMBL | D7LUG9 | 1e-77 | D7LUG9_ARALL; Uncharacterized protein | ||||
STRING | Bostr.11793s0064.1.p | 1e-78 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53310.1 | 5e-67 | B3 family protein |