PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA33G00141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ZF-HD | ||||||||
Protein Properties | Length: 246aa MW: 28351.9 Da PI: 9.4583 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.4 | 6.1e-32 | 48 | 103 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +kv+YkeC+kNhAa+ Ggh++DGCgEfm+s geeg++++l CaAC+CHR+FHR+e + AA33G00141 48 QKVKYKECQKNHAATSGGHVIDGCGEFMSS-GEEGSPESLLCAACDCHRSFHRKEID 103 789**************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.5E-29 | 50 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-15 | 50 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.8E-31 | 51 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.417 | 52 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 167 | 235 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.75E-15 | 168 | 234 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.7E-28 | 174 | 231 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEEQQLEISI SKRRKSIKPT KRIESNPVTN PDPDPKSNPK PQKSPNQQKV KYKECQKNHA 60 ATSGGHVIDG CGEFMSSGEE GSPESLLCAA CDCHRSFHRK EIDGVYVVKV SNFTHQTRPV 120 ITHQASPIMM SFGGGGVAGA PAESSTEDLN KIHHCFNKGF DFNQFQENHY HSPKKRFRTK 180 FNKEQKEKMM EFAEKIKWRI NKGEDDEVNR FCSEINVKRQ VFKVWMHNHK QNQHQQQNQE 240 EKSNKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-19 | 175 | 230 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA33G00141 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006409164.1 | 4e-97 | zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 1e-96 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A078JR93 | 6e-98 | A0A078JR93_BRANA; BnaCnng66730D protein | ||||
STRING | XP_006409164.1 | 2e-96 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6515 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 3e-79 | homeobox protein 24 |