PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA33G00109

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

SRS

Protein Properties

Length: 270aa MW: 30358.4 Da PI: 7.9474

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA33G00109	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	176.5	1.2e-54	69	207	2	152
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100 rs t+ C+dCGnqakk+C+h+RCRtCCks+g+dC thv+stW+p+akrrer+qq + ++ + a + +++++ + +++l+ ++e+ AA33G00109 69 RSSTICCRDCGNQAKKGCTHMRCRTCCKSHGLDCPTHVRSTWIPIAKRRERKQQIQPETTAHGDGA--GQINSPKRY--RPAANLD---------SSEM 154 577899*******************************************999988765554433..333333332..1222222.........2345 PP DUF702 101 etsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGl 152 e +++Peev+s+a+frcvr+s+ +d + ++aYqt+v+i+Gh+fkGiLydqG+ AA33G00109 155 EDTKFPEEVNSNAMFRCVRMSGTEDeRDGQYAYQTTVDIAGHLFKGILYDQGP 207 6678***************9956789********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-55	72	207	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.0E-25	75	116	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.2E-26	158	207	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MANIFTLGSS RNTNQEPEEE NQTNWIWYKN INQSSTQTWQ NTPQEQEIFM NHHQRNQMNV 60 YDLSTSSSRS STICCRDCGN QAKKGCTHMR CRTCCKSHGL DCPTHVRSTW IPIAKRRERK 120 QQIQPETTAH GDGAGQINSP KRYRPAANLD SSEMEDTKFP EEVNSNAMFR CVRMSGTEDE 180 RDGQYAYQTT VDIAGHLFKG ILYDQGPISN YNKSGNTGNS RGSSAKGRDR GGPENSVAAA 240 VVEPNAGGYY PSDISMFMPQ GTQYYQNARP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA33G00109

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006412014.1	8e-87	protein SHI RELATED SEQUENCE 2
Swissprot	O65517	1e-74	SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBL	V4ME11	2e-85	V4ME11_EUTSA; Uncharacterized protein
STRING	XP_006412014.1	3e-86	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15117	15	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36260.1	7e-70	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]