PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA33G00033 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | Nin-like | ||||||||
Protein Properties | Length: 958aa MW: 106806 Da PI: 5.2232 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.3 | 2.3e-26 | 634 | 696 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLg............vclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++g vc+T+LKriCRq+GI RWP+Rkik++ AA33G00033 634 EKTIGLEVLRQYFAGSLKDAAKSIGdsdvirfhsdvaVCPTTLKRICRQHGITRWPSRKIKKV 696 799**********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.426 | 623 | 716 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.3E-22 | 637 | 696 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 5.05E-24 | 849 | 944 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.1E-24 | 857 | 941 | No hit | No description |
PROSITE profile | PS51745 | 28.957 | 859 | 942 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.2E-27 | 859 | 942 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.8E-19 | 860 | 941 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.06E-43 | 860 | 941 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 958 aa Download sequence Send to blast |
MEDNGGGEGN GGLSPNSTFG GFPETAMDLD FMEELLFDGC WLETTDGKSL NQTEESASAS 60 IAMNDNNSFL YSYQELITSH FGENSSQNNE ERERLMLPSS PNYLKIESMN QESLNQEVTS 120 SAETERFLLE ESEVGRRWWI APRTSTGPSS SVTERLLQAI NGLNEAIQDK DFLVQIWVPF 180 HQEGKNFLTT LAQPHLFNQN YSSLAKYRHV SETYNFPTDE DSKESQGLPG RVFLRKLPEW 240 TPDVRFFGSD EYPRIKEARN CDVRGSLALP VFERGSGTCL GVVEIVTTTQ KMNYRPELEN 300 ICKALEAVDL RSSNHPSIEV YSEFYQAALP EISDFLLSVC RTYDLPLALS WAPCARQGKS 360 GSRHSNENIS QCVSTIDFAC IAFEEQSNSF LEACSEHHLL QEEGIVGKAF KATKLYFVPD 420 VTTFNRKNYP LAHHAKISGL HAALAVPLKS KFNGLVEFVL EFFFPKACLE TEAQQELLKS 480 LYGTLQQDFR SLNLVIDKDL ELEIVLPVRE TMVIQENPLN GTETTENLKS RSLTEIHQQE 540 SSWIPHMLNA NEKGKGMSLS WEYQKEDPTE EFKLTSGWDN SQLDPRSNNF ISEPEQFQKG 600 PIIEVDPSID SASTAAGKVL GSRKAGEKRR TKTEKTIGLE VLRQYFAGSL KDAAKSIGDS 660 DVIRFHSDVA VCPTTLKRIC RQHGITRWPS RKIKKVGHSL KKLQLVMDSV QGAQGSIQLD 720 SFYTSFPELS SPNMSGNGPD LQTRHLNAQT ENGVPAQETT APKSPSSSCS KSSGSSASCS 780 NGADKSTNTL NTANTLVSED AGAVVKKGQH KAELVTMDQE ETKCLSRSQS HKIFKEHPLL 840 ENLPPLPGSS NKGLRAGGSI KVKATFGEAR VRFTLLPSCG FRELQQEIAR RFNIEEISRF 900 DLKYLDDDKE WVLLTCDADL EECIDIYRSS QSQTIKISLH EGFQVKLGGS FGSSRRSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA33G00033 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010548150.1 | 0.0 | PREDICTED: protein NLP2-like | ||||
Refseq | XP_010548151.1 | 0.0 | PREDICTED: protein NLP2-like | ||||
Refseq | XP_010548152.1 | 0.0 | PREDICTED: protein NLP2-like | ||||
Refseq | XP_019058754.1 | 0.0 | PREDICTED: protein NLP2-like | ||||
Swissprot | Q7X9B9 | 0.0 | NLP2_ARATH; Protein NLP2 | ||||
TrEMBL | V4MB36 | 0.0 | V4MB36_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.18351s0175.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1998 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |