PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00967
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NF-YB
Protein Properties Length: 270aa    MW: 30639.8 Da    PI: 3.8496
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00967genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB42.61.5e-13395794
       NF-YB  7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
                +lP+a v r++k  l +     +  i k+a     e +  fi ++++ a+d c+  kr+t+++dd++ al ++ f +++eplk+ l+++++ +
  AA32G00967  3 ELPLAIVRRVVKDKLSEcspdyDVSIHKEALLAFSESARIFIHYLSATANDFCKDSKRQTMKADDVFKALEEMDFAEFLEPLKASLEEFKQKN 95
                69**********999652222356899************************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008087.9E-8372IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.2E-24393IPR009072Histone-fold
SuperFamilySSF471137.43E-19595IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEELPLAIVR RVVKDKLSEC SPDYDVSIHK EALLAFSESA RIFIHYLSAT ANDFCKDSKR  60
QTMKADDVFK ALEEMDFAEF LEPLKASLEE FKQKNAGKRG AAGTTSKPVS KAKETTKKRK  120
QEGSSLQKSQ RKSKRDEVDN TNEKEDENTE ATEKDDEDNE KEDENTEETA NDEENEKDDE  180
NIEENESDEE NEKEDENTED TGNDEENEME DDEKEVEGNS IEENENGNDE SGNEDNSIEE  240
HGDDNDVSGN EDSSTEENGN EFGDDDEEDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00967
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024003731.17e-74DNA polymerase epsilon subunit 3
TrEMBLA0A1J3D4Q64e-70A0A1J3D4Q6_NOCCA; DNA polymerase epsilon subunit 3 (Fragment)
TrEMBLA0A1J3IA233e-70A0A1J3IA23_NOCCA; DNA polymerase epsilon subunit 3 (Fragment)
STRINGCagra.1201s0002.1.p4e-72(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-58nuclear factor Y, subunit B11